C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sodium channel, voltage-gated, type I, beta a
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000060222 scn1ba 7955 + 16:44643168-44667205 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000058611 scn1ba-002 44643294-44667205 protein_coding
  ENSDART00000084631 scn1ba-001 44643168-44667039 protein_coding
  ENSDART00000084639 scn1ba-004 44643294-44667040 protein_coding
  ENSDART00000131491 scn1ba-003 44643294-44658757 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000058611ENSDART00000084631ENSDART00000084639
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000058611 N/A 6.421±4.94 6.938±4.76 N/A 0.923±0.00
ENSDART00000084631 13.026±2.12 0.253±0.00 N/A N/A 1.287±0.00
ENSDART00000084639 N/A N/A N/A 0.039±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001VC CIL_0001VC_0001 CGP 16:44643168-44730654

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001518 IEA voltage-gated sodium channel complex
GO:0005248 IGI voltage-gated sodium channel activity
GO:0005515 IEA protein binding
GO:0005887 IC integral to plasma membrane
GO:0006810 IEA transport
GO:0006811 IEA ion transport
GO:0006814 IEA sodium ion transport
GO:0017080 IEA sodium channel regulator activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000105711 SCN1B sodium channel, voltage-gated, type I, beta subunit protein_coding Homo_sapiens
ENSMUSG00000019194 Scn1b sodium channel, voltage-gated, type I, beta protein_coding Mus_musculus

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