C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: splicing factor 3b, subunit 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000089880 sf3b3 7955 - 18:18209587-18365719 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000008310 sf3b3-201 18209587-18365672 protein_coding
  ENSDART00000122831 sf3b3-202 18333489-18364408 protein_coding
  ENSDART00000145582 sf3b3-002 18333597-18337960 retained_intron
  ENSDART00000147743 sf3b3-001 18332810-18365719 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000008310ENSDART00000147743
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000008310 0.947±0.59 1.374±0.77 4.685±2.96 0.964±0.00 0.848±0.00
ENSDART00000147743 0.699±0.12 0.597±0.04 1.278±0.00 0.262±0.00 0.435±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000CK CIL_0000CK_0001 CGP 18:18186339-18365719

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005681 IEA spliceosomal complex
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000189091 SF3B3 splicing factor 3b, subunit 3, 130kDa protein_coding Homo_sapiens
ENSMUSG00000033732 Sf3b3 splicing factor 3b, subunit 3 protein_coding Mus_musculus

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