C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RTEL1-TNFRSF6B readthrough (NMD candidate)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000026036 RTEL1-TNFRSF6B 9606 + 20:63659300-63698698 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000480273 RTEL1-TNFRSF6B-003 63686371-63698684 retained_intron
  ENST00000482936 RTEL1-TNFRSF6B-001 63659403-63698684 nonsense_mediated_decay
  ENST00000492259 RTEL1-TNFRSF6B-002 63659300-63698684 nonsense_mediated_decay
  ENST00000496281 RTEL1-TNFRSF6B-004 63688961-63698680 retained_intron
  ENST00000622743 RTEL1-TNFRSF6B-201 63659403-63698698 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; MuscleOvaryENST00000492259
Transcript ID Muscle Ovary
ENST00000492259 0.645±0.00 2.295±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003U1 CIL_0003U1_0001 CGP 20:63639705-63696253

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0004003 IEA ATP-dependent DNA helicase activity
GO:0004872 TAS receptor activity
GO:0005515 IPI:IEA protein binding
GO:0005524 IEA ATP binding
GO:0005615 NAS extracellular space
GO:0005634 IEA nucleus
GO:0006139 IEA nucleobase-containing compound metabolic process
GO:0006200 IEA ATP catabolic process
GO:0006915 IEA apoptotic process
GO:0008026 IEA ATP-dependent helicase activity
GO:0016818 IEA hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0032508 IEA DNA duplex unwinding
GO:0043066 TAS negative regulation of apoptotic process

Homologs

No Homologs available.

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