C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: intercellular adhesion molecule 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000108622 ICAM2 9606 - 17:64002594-64020634 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000412356 ICAM2-201 64002596-64020634 protein_coding
  ENST00000418105 ICAM2-202 64002596-64020634 protein_coding
  ENST00000449662 ICAM2-002 64002595-64006932 protein_coding
  ENST00000578313 ICAM2-010 64003644-64020579 protein_coding
  ENST00000578379 ICAM2-006 64002594-64020625 protein_coding
  ENST00000578892 ICAM2-008 64002594-64020625 protein_coding
  ENST00000579687 ICAM2-004 64002632-64020607 protein_coding
  ENST00000579788 ICAM2-001 64002596-64020602 protein_coding
  ENST00000580011 ICAM2-005 64004255-64020595 retained_intron
  ENST00000580389 ICAM2-014 64004927-64006769 retained_intron
  ENST00000581417 ICAM2-013 64002632-64006746 processed_transcript
  ENST00000583186 ICAM2-003 64005939-64020632 retained_intron
  ENST00000583366 ICAM2-012 64003649-64020551 protein_coding
  ENST00000583684 ICAM2-007 64002594-64020625 nonsense_mediated_decay
  ENST00000584084 ICAM2-011 64003793-64020579 protein_coding
  ENST00000584403 ICAM2-009 64003870-64020618 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000418105ENST00000449662ENST00000578379ENST00000578892ENST00000579687ENST00000579788ENST00000580011ENST00000583366ENST00000583684ENST00000584403
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000418105 N/A N/A N/A N/A N/A 3.534±3.34 N/A N/A 1.175±0.00 N/A N/A N/A N/A N/A
ENST00000449662 N/A 19.334±0.00 N/A 4.700±2.98 8.767±0.00 N/A N/A N/A N/A N/A N/A 2.872±0.00 4.745±0.00 N/A
ENST00000578379 15.908±0.00 18.618±0.00 N/A 9.218±0.00 N/A 9.240±0.00 N/A N/A N/A N/A N/A N/A 12.451±0.00 N/A
ENST00000578892 N/A N/A N/A N/A N/A N/A N/A 6.781±0.00 N/A N/A 1.786±0.00 N/A N/A N/A
ENST00000579687 N/A N/A N/A N/A N/A N/A N/A N/A 0.493±0.00 N/A N/A N/A N/A N/A
ENST00000579788 34.371±0.00 44.651±0.00 N/A N/A 21.249±0.00 11.863±10.94 10.574±9.67 6.295±0.00 4.761±0.00 55.618±0.00 6.540±0.00 15.060±8.45 86.220±59.54 12.601±0.00
ENST00000580011 N/A N/A N/A N/A N/A N/A 0.267±0.00 N/A N/A N/A 0.553±0.00 N/A N/A N/A
ENST00000583366 N/A N/A N/A N/A 1.857±0.00 N/A N/A 7.961±0.00 N/A 36.560±0.00 4.466±0.00 N/A N/A N/A
ENST00000583684 N/A 19.841±0.00 2.053±0.00 1.446±0.00 13.248±0.00 N/A 2.076±0.00 N/A 1.943±0.25 19.305±14.55 4.320±1.89 25.408±0.00 20.490±0.00 11.547±0.00
ENST00000584403 N/A N/A N/A N/A N/A N/A N/A 0.108±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002P3 CIL_0002P3_0001 CGP 17:63938554-64004304
CIL_0002P5 CIL_0002P5_0001 CGP 17:63998351-64020634
CIL_0006GW CIL_0006GW_0001 CGP 17:64002594-64130819

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001931 IEA uropod
GO:0005178 IPI integrin binding
GO:0005515 IEA protein binding
GO:0005886 TAS plasma membrane
GO:0005887 IEA integral component of plasma membrane
GO:0016020 IDA membrane
GO:0016337 IEA single organismal cell-cell adhesion
GO:0030198 TAS extracellular matrix organization
GO:0050776 TAS regulation of immune response
GO:0070062 IDA extracellular vesicular exosome
GO:0071944 IEA cell periphery

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000001029 Icam2 intercellular adhesion molecule 2 protein_coding Mus_musculus

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