Institute of Cardiovascular Regeneration Webtool Repository

Warning (512): _cake_core_ cache was unable to write 'cake_dev_eng' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'cake_dev_eng'
$value = array(
	'LC_MESSAGES' => array()
)
$config = '_cake_core_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/persistent/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
I18n::translate() - CORE/Cake/I18n/I18n.php, line 237
__d - CORE/Cake/basics.php, line 617
Cache::write() - CORE/Cake/Cache/Cache.php, line 321
DataSource::listSources() - CORE/Cake/Model/Datasource/DataSource.php, line 110
Mysql::listSources() - CORE/Cake/Model/Datasource/Database/Mysql.php, line 219
Model::setSource() - CORE/Cake/Model/Model.php, line 1142
Model::getDataSource() - CORE/Cake/Model/Model.php, line 3551
Model::__call() - CORE/Cake/Model/Model.php, line 808
Gene::findByid() - APP/Controller/GeneController.php, line 302
GeneController::show() - APP/Controller/GeneController.php, line 302
ReflectionMethod::invokeArgs() - [internal], line ??
Controller::invokeAction() - CORE/Cake/Controller/Controller.php, line 490
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 191
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Warning (512): _cake_model_ cache was unable to write 'default_citloci_list' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'default_citloci_list'
$value = null
$config = '_cake_model_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/models/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
DataSource::listSources() - CORE/Cake/Model/Datasource/DataSource.php, line 110
Mysql::listSources() - CORE/Cake/Model/Datasource/Database/Mysql.php, line 219
Model::setSource() - CORE/Cake/Model/Model.php, line 1142
Model::getDataSource() - CORE/Cake/Model/Model.php, line 3551
Model::__call() - CORE/Cake/Model/Model.php, line 808
Gene::findByid() - APP/Controller/GeneController.php, line 302
GeneController::show() - APP/Controller/GeneController.php, line 302
ReflectionMethod::invokeArgs() - [internal], line ??
Controller::invokeAction() - CORE/Cake/Controller/Controller.php, line 490
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 191
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Warning (512): _cake_model_ cache was unable to write 'default_citloci_list' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'default_citloci_list'
$value = array(
	(int) 0 => 'conserved_region_elements',
	(int) 1 => 'conserved_regions',
	(int) 2 => 'diffexp',
	(int) 3 => 'experiment',
	(int) 4 => 'expressed_transcripts',
	(int) 5 => 'external_accessions',
	(int) 6 => 'genes',
	(int) 7 => 'go_annotations',
	(int) 8 => 'homologues',
	(int) 9 => 'maptranscripttoregion',
	(int) 10 => 'organism',
	(int) 11 => 'sample',
	(int) 12 => 'study',
	(int) 13 => 'synonyms',
	(int) 14 => 'transcripts'
)
$config = '_cake_model_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/models/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
DataSource::listSources() - CORE/Cake/Model/Datasource/DataSource.php, line 110
Mysql::listSources() - CORE/Cake/Model/Datasource/Database/Mysql.php, line 236
Model::setSource() - CORE/Cake/Model/Model.php, line 1142
Model::getDataSource() - CORE/Cake/Model/Model.php, line 3551
Model::__call() - CORE/Cake/Model/Model.php, line 808
Gene::findByid() - APP/Controller/GeneController.php, line 302
GeneController::show() - APP/Controller/GeneController.php, line 302
ReflectionMethod::invokeArgs() - [internal], line ??
Controller::invokeAction() - CORE/Cake/Controller/Controller.php, line 490
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 191
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Warning (512): _cake_model_ cache was unable to write 'default_citloci_genes' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'default_citloci_genes'
$value = null
$config = '_cake_model_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/models/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
DataSource::_cacheDescription() - CORE/Cake/Model/Datasource/DataSource.php, line 310
DataSource::describe() - CORE/Cake/Model/Datasource/DataSource.php, line 135
Mysql::describe() - CORE/Cake/Model/Datasource/Database/Mysql.php, line 332
Model::schema() - CORE/Cake/Model/Model.php, line 1372
DboSource::fields() - CORE/Cake/Model/Datasource/DboSource.php, line 2491
DboSource::read() - CORE/Cake/Model/Datasource/DboSource.php, line 1054
Model::_readDataSource() - CORE/Cake/Model/Model.php, line 2947
Model::find() - CORE/Cake/Model/Model.php, line 2919
DboSource::query() - CORE/Cake/Model/Datasource/DboSource.php, line 597
Model::__call() - CORE/Cake/Model/Model.php, line 808
Gene::findByid() - APP/Controller/GeneController.php, line 302
GeneController::show() - APP/Controller/GeneController.php, line 302
ReflectionMethod::invokeArgs() - [internal], line ??
Controller::invokeAction() - CORE/Cake/Controller/Controller.php, line 490
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 191
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165

Warning (512): _cake_model_ cache was unable to write 'default_citloci_genes' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'default_citloci_genes'
$value = array(
	'id' => array(
		'type' => 'string',
		'null' => false,
		'default' => null,
		'length' => (int) 32,
		'key' => 'primary',
		'collate' => 'latin1_swedish_ci',
		'charset' => 'latin1'
	),
	'gene_version' => array(
		'type' => 'string',
		'null' => true,
		'default' => null,
		'length' => (int) 8,
		'collate' => 'latin1_swedish_ci',
		'charset' => 'latin1'
	),
	'tax_id' => array(
		'type' => 'string',
		'null' => false,
		'default' => null,
		'length' => (int) 8,
		'collate' => 'latin1_swedish_ci',
		'charset' => 'latin1'
	),
	'assembly' => array(
		'type' => 'string',
		'null' => false,
		'default' => null,
		'length' => (int) 64,
		'collate' => 'latin1_swedish_ci',
		'charset' => 'latin1'
	),
	'chromosome' => array(
		'type' => 'string',
		'null' => false,
		'default' => null,
		'length' => (int) 64,
		'collate' => 'latin1_swedish_ci',
		'charset' => 'latin1'
	),
	'strand' => array(
		'type' => 'string',
		'null' => false,
		'default' => null,
		'length' => (int) 8,
		'collate' => 'latin1_swedish_ci',
		'charset' => 'latin1'
	),
	'start' => array(
		'type' => 'integer',
		'null' => false,
		'default' => null,
		'length' => (int) 11,
		'unsigned' => false
	),
	'end' => array(
		'type' => 'integer',
		'null' => false,
		'default' => null,
		'length' => (int) 11,
		'unsigned' => false
	),
	'gene_name' => array(
		'type' => 'string',
		'null' => true,
		'default' => null,
		'length' => (int) 64,
		'collate' => 'latin1_swedish_ci',
		'charset' => 'latin1'
	),
	'gene_source' => array(
		'type' => 'string',
		'null' => true,
		'default' => null,
		'length' => (int) 64,
		'collate' => 'latin1_swedish_ci',
		'charset' => 'latin1'
	),
	'gene_biotype' => array(
		'type' => 'string',
		'null' => true,
		'default' => null,
		'length' => (int) 128,
		'collate' => 'latin1_swedish_ci',
		'charset' => 'latin1'
	),
	'annotation_version' => array(
		'type' => 'string',
		'null' => false,
		'default' => null,
		'length' => (int) 8,
		'collate' => 'latin1_swedish_ci',
		'charset' => 'latin1'
	),
	'gene_description' => array(
		'type' => 'string',
		'null' => true,
		'default' => null,
		'length' => (int) 128,
		'collate' => 'latin1_swedish_ci',
		'charset' => 'latin1'
	)
)
$config = '_cake_model_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/models/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
DataSource::_cacheDescription() - CORE/Cake/Model/Datasource/DataSource.php, line 310
Mysql::describe() - CORE/Cake/Model/Datasource/Database/Mysql.php, line 372
Model::schema() - CORE/Cake/Model/Model.php, line 1372
DboSource::fields() - CORE/Cake/Model/Datasource/DboSource.php, line 2491
DboSource::read() - CORE/Cake/Model/Datasource/DboSource.php, line 1054
Model::_readDataSource() - CORE/Cake/Model/Model.php, line 2947
Model::find() - CORE/Cake/Model/Model.php, line 2919
DboSource::query() - CORE/Cake/Model/Datasource/DboSource.php, line 597
Model::__call() - CORE/Cake/Model/Model.php, line 808
Gene::findByid() - APP/Controller/GeneController.php, line 302
GeneController::show() - APP/Controller/GeneController.php, line 302
ReflectionMethod::invokeArgs() - [internal], line ??
Controller::invokeAction() - CORE/Cake/Controller/Controller.php, line 490
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 191
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Gene Info
Description:	structural maintenance of chromosomes 4
Gene Accession	Gene Name	Tax ID	Strand	Position	Gene Biotype
ENSG00000113810	SMC4	9606	+	3:160399274-160434962	protein_coding
	Transcript Accession	Transcript Name	Position	Transcript Biotype
	ENST00000344722	SMC4-007	160400482-160434953	protein_coding
	ENST00000357388	SMC4-001	160399304-160434962	protein_coding
	ENST00000462668	SMC4-008	160414023-160434954	retained_intron
	ENST00000462787	SMC4-006	160399668-160433990	protein_coding
	ENST00000465563	SMC4-019	160411758-160414517	retained_intron
	ENST00000465903	SMC4-010	160399638-160402867	protein_coding
	ENST00000467263	SMC4-021	160412335-160413754	retained_intron
	ENST00000467468	SMC4-014	160399650-160411964	protein_coding
	ENST00000468653	SMC4-002	160399650-160414500	retained_intron
	ENST00000469762	SMC4-003	160399650-160433910	protein_coding
	ENST00000469858	SMC4-004	160399651-160424947	nonsense_mediated_decay
	ENST00000470240	SMC4-017	160402809-160412852	processed_transcript
	ENST00000472282	SMC4-013	160399643-160412453	processed_transcript
	ENST00000472991	SMC4-012	160399643-160412025	protein_coding
	ENST00000484799	SMC4-027	160417624-160419502	retained_intron
	ENST00000485645	SMC4-011	160399639-160404336	protein_coding
	ENST00000485867	SMC4-016	160399669-160404504	protein_coding
	ENST00000486711	SMC4-025	160430929-160432443	retained_intron
	ENST00000487747	SMC4-026	160404499-160416403	processed_transcript
	ENST00000488017	SMC4-024	160428796-160431043	retained_intron
	ENST00000489573	SMC4-005	160399666-160414515	protein_coding
	ENST00000490207	SMC4-015	160399669-160404358	protein_coding
	ENST00000493695	SMC4-022	160414438-160416627	retained_intron
	ENST00000494612	SMC4-020	160412022-160413583	processed_transcript
	ENST00000497203	SMC4-023	160420582-160423594	retained_intron
	ENST00000497311	SMC4-009	160399274-160404336	protein_coding
	ENST00000497984	SMC4-018	160403991-160413484	processed_transcript

Gene Info

Description:

structural maintenance of chromosomes 4

Gene Accession

Gene Name

Tax ID

Strand

Position

Gene Biotype

ENSG00000113810

SMC4

9606

3:160399274-160434962

protein_coding

Transcript Accession

Transcript Name

Position

Transcript Biotype

ENST00000344722

SMC4-007

160400482-160434953

protein_coding

ENST00000357388

SMC4-001

160399304-160434962

protein_coding

ENST00000462668

SMC4-008

160414023-160434954

retained_intron

ENST00000462787

SMC4-006

160399668-160433990

protein_coding

ENST00000465563

SMC4-019

160411758-160414517

retained_intron

ENST00000465903

SMC4-010

160399638-160402867

protein_coding

ENST00000467263

SMC4-021

160412335-160413754

retained_intron

ENST00000467468

SMC4-014

160399650-160411964

protein_coding

ENST00000468653

SMC4-002

160399650-160414500

retained_intron

ENST00000469762

SMC4-003

160399650-160433910

protein_coding

ENST00000469858

SMC4-004

160399651-160424947

nonsense_mediated_decay

ENST00000470240

SMC4-017

160402809-160412852

processed_transcript

ENST00000472282

SMC4-013

160399643-160412453

processed_transcript

ENST00000472991

SMC4-012

160399643-160412025

protein_coding

ENST00000484799

SMC4-027

160417624-160419502

retained_intron

ENST00000485645

SMC4-011

160399639-160404336

protein_coding

ENST00000485867

SMC4-016

160399669-160404504

protein_coding

ENST00000486711

SMC4-025

160430929-160432443

retained_intron

ENST00000487747

SMC4-026

160404499-160416403

processed_transcript

ENST00000488017

SMC4-024

160428796-160431043

retained_intron

ENST00000489573

SMC4-005

160399666-160414515

protein_coding

ENST00000490207

SMC4-015

160399669-160404358

protein_coding

ENST00000493695

SMC4-022

160414438-160416627

retained_intron

ENST00000494612

SMC4-020

160412022-160413583

processed_transcript

ENST00000497203

SMC4-023

160420582-160423594

retained_intron

ENST00000497311

SMC4-009

160399274-160404336

protein_coding

ENST00000497984

SMC4-018

160403991-160413484

processed_transcript

Transcript ID	Adipose	Adrenal	Bladder	Breast	Colon	Heart	Kidney	Liver	Lung	Muscle	Ovary	Placenta	Testis
ENST00000357388	N/A	N/A	N/A	N/A	N/A	N/A	1.014±0.00	N/A	N/A	N/A	N/A	N/A	N/A
ENST00000462668	N/A	N/A	N/A	2.315±0.00	N/A	0.768±0.00	N/A	1.349±0.00	N/A	N/A	N/A	N/A	N/A
ENST00000462787	N/A	N/A	0.956±0.00	2.014±0.00	N/A	N/A	N/A	N/A	2.747±0.00	N/A	N/A	N/A	N/A
ENST00000465563	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	0.354±0.00	N/A	N/A	N/A
ENST00000469762	1.596±0.00	2.311±0.00	N/A	2.937±1.27	2.532±0.00	1.277±0.66	2.861±0.00	1.245±0.35	1.967±0.00	1.110±0.00	5.426±4.53	1.867±0.04	10.258±2.64
ENST00000469858	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	9.832±0.00	4.264±0.00	17.671±0.00
ENST00000486711	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	48.760±0.00	22.184±0.00	93.836±0.00
ENST00000497203	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	3.529±0.00	N/A	N/A	N/A
ENST00000497984	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	47.615±0.00	30.700±0.00	104.620±0.00

Conserved Regions
Region ID	Sub-Region	Region Type	Position
CIL_0004JR	CIL_0004JR_0002	CGP	3:160256986-160434962
CIL_0004JQ	CIL_0004JQ_0002	CGP	3:160399274-160485773

Conserved Regions

Region ID

Sub-Region

Region Type

Position

CIL_0004JR

CIL_0004JR_0002

CGP

3:160256986-160434962

CIL_0004JQ

CIL_0004JQ_0002

CGP

3:160399274-160485773

Gene Ontology
GO ID	Evidence Type	GO Description
GO:0000070	TAS	mitotic sister chromatid segregation
GO:0000278	TAS	mitotic cell cycle
GO:0000796	IDA	condensin complex
GO:0004888	IEA	transmembrane signaling receptor activity
GO:0005515	IPI:IEA	protein binding
GO:0005524	TAS:IEA	ATP binding
GO:0005634	IDA	nucleus
GO:0005654	TAS	nucleoplasm
GO:0005694	IEA	chromosome
GO:0005737	IDA	cytoplasm
GO:0005829	TAS	cytosol
GO:0006935	IEA	chemotaxis
GO:0007076	IDA	mitotic chromosome condensation
GO:0007165	IEA	signal transduction
GO:0010032	IEA	meiotic chromosome condensation
GO:0016020	IEA	membrane
GO:0045132	IEA	meiotic chromosome segregation
GO:0046982	IPI	protein heterodimerization activity
GO:0051276	IEA	chromosome organization
GO:0051383	IEA	kinetochore organization

Gene Ontology

GO ID

Evidence Type

GO Description

GO:0000070

TAS

mitotic sister chromatid segregation

GO:0000278

TAS

mitotic cell cycle

GO:0000796

IDA

condensin complex

GO:0004888

IEA

transmembrane signaling receptor activity

GO:0005515

IPI:IEA

protein binding

GO:0005524

TAS:IEA

ATP binding

GO:0005634

IDA

nucleus

GO:0005654

TAS

nucleoplasm

GO:0005694

IEA

chromosome

GO:0005737

IDA

cytoplasm

GO:0005829

TAS

cytosol

GO:0006935

IEA

chemotaxis

GO:0007076

IDA

mitotic chromosome condensation

GO:0007165

IEA

signal transduction

GO:0010032

IEA

meiotic chromosome condensation

GO:0016020

IEA

membrane

GO:0045132

IEA

meiotic chromosome segregation

GO:0046982

IPI

protein heterodimerization activity

GO:0051276

IEA

chromosome organization

GO:0051383

IEA

kinetochore organization

Warning (512): _cake_core_ cache was unable to write 'file_map' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'file_map'
$value = array(
	'Configure' => '/var/www/c-it-loci/lib/Cake/Core/Configure.php',
	'Hash' => '/var/www/c-it-loci/lib/Cake/Utility/Hash.php',
	'Cache' => '/var/www/c-it-loci/lib/Cake/Cache/Cache.php',
	'FileEngine' => '/var/www/c-it-loci/lib/Cake/Cache/Engine/FileEngine.php',
	'CacheEngine' => '/var/www/c-it-loci/lib/Cake/Cache/CacheEngine.php',
	'Inflector' => '/var/www/c-it-loci/lib/Cake/Utility/Inflector.php',
	'ErrorHandler' => '/var/www/c-it-loci/lib/Cake/Error/ErrorHandler.php',
	'CakePlugin' => '/var/www/c-it-loci/lib/Cake/Core/CakePlugin.php',
	'CakeLog' => '/var/www/c-it-loci/lib/Cake/Log/CakeLog.php',
	'LogEngineCollection' => '/var/www/c-it-loci/lib/Cake/Log/LogEngineCollection.php',
	'ObjectCollection' => '/var/www/c-it-loci/lib/Cake/Utility/ObjectCollection.php',
	'FileLog' => '/var/www/c-it-loci/lib/Cake/Log/Engine/FileLog.php',
	'BaseLog' => '/var/www/c-it-loci/lib/Cake/Log/Engine/BaseLog.php',
	'CakeLogInterface' => '/var/www/c-it-loci/lib/Cake/Log/CakeLogInterface.php',
	'Debugger' => '/var/www/c-it-loci/lib/Cake/Utility/Debugger.php',
	'String' => '/var/www/c-it-loci/lib/Cake/Utility/String.php',
	'Dispatcher' => '/var/www/c-it-loci/lib/Cake/Routing/Dispatcher.php',
	'CakeEventListener' => '/var/www/c-it-loci/lib/Cake/Event/CakeEventListener.php',
	'CakeRequest' => '/var/www/c-it-loci/lib/Cake/Network/CakeRequest.php',
	'CakeResponse' => '/var/www/c-it-loci/lib/Cake/Network/CakeResponse.php',
	'CakeEvent' => '/var/www/c-it-loci/lib/Cake/Event/CakeEvent.php',
	'CakeEventManager' => '/var/www/c-it-loci/lib/Cake/Event/CakeEventManager.php',
	'AssetDispatcher' => '/var/www/c-it-loci/lib/Cake/Routing/Filter/AssetDispatcher.php',
	'DispatcherFilter' => '/var/www/c-it-loci/lib/Cake/Routing/DispatcherFilter.php',
	'CacheDispatcher' => '/var/www/c-it-loci/lib/Cake/Routing/Filter/CacheDispatcher.php',
	'Router' => '/var/www/c-it-loci/lib/Cake/Routing/Router.php',
	'CakeRoute' => '/var/www/c-it-loci/lib/Cake/Routing/Route/CakeRoute.php',
	'PluginShortRoute' => '/var/www/c-it-loci/lib/Cake/Routing/Route/PluginShortRoute.php',
	'GeneController' => '/var/www/c-it-loci/app/Controller/GeneController.php',
	'AppController' => '/var/www/c-it-loci/app/Controller/AppController.php',
	'Controller' => '/var/www/c-it-loci/lib/Cake/Controller/Controller.php',
	'Object' => '/var/www/c-it-loci/lib/Cake/Core/Object.php',
	'ComponentCollection' => '/var/www/c-it-loci/lib/Cake/Controller/ComponentCollection.php',
	'SessionComponent' => '/var/www/c-it-loci/lib/Cake/Controller/Component/SessionComponent.php',
	'Component' => '/var/www/c-it-loci/lib/Cake/Controller/Component.php',
	'RequestHandlerComponent' => '/var/www/c-it-loci/lib/Cake/Controller/Component/RequestHandlerComponent.php',
	'ClassRegistry' => '/var/www/c-it-loci/lib/Cake/Utility/ClassRegistry.php',
	'Gene' => '/var/www/c-it-loci/app/Model/Gene.php',
	'AppModel' => '/var/www/c-it-loci/app/Model/AppModel.php',
	'Model' => '/var/www/c-it-loci/lib/Cake/Model/Model.php',
	'BehaviorCollection' => '/var/www/c-it-loci/lib/Cake/Model/BehaviorCollection.php',
	'ConnectionManager' => '/var/www/c-it-loci/lib/Cake/Model/ConnectionManager.php',
	'Mysql' => '/var/www/c-it-loci/lib/Cake/Model/Datasource/Database/Mysql.php',
	'DboSource' => '/var/www/c-it-loci/lib/Cake/Model/Datasource/DboSource.php',
	'DataSource' => '/var/www/c-it-loci/lib/Cake/Model/Datasource/DataSource.php',
	'I18n' => '/var/www/c-it-loci/lib/Cake/I18n/I18n.php',
	'L10n' => '/var/www/c-it-loci/lib/Cake/I18n/L10n.php',
	'CakeSession' => '/var/www/c-it-loci/lib/Cake/Model/Datasource/CakeSession.php',
	'View' => '/var/www/c-it-loci/lib/Cake/View/View.php',
	'HelperCollection' => '/var/www/c-it-loci/lib/Cake/View/HelperCollection.php',
	'ViewBlock' => '/var/www/c-it-loci/lib/Cake/View/ViewBlock.php',
	'HtmlHelper' => '/var/www/c-it-loci/lib/Cake/View/Helper/HtmlHelper.php',
	'AppHelper' => '/var/www/c-it-loci/app/View/Helper/AppHelper.php',
	'Helper' => '/var/www/c-it-loci/lib/Cake/View/Helper.php',
	'FormHelper' => '/var/www/c-it-loci/lib/Cake/View/Helper/FormHelper.php',
	'SessionHelper' => '/var/www/c-it-loci/lib/Cake/View/Helper/SessionHelper.php'
)
$config = '_cake_core_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/persistent/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
App::shutdown() - CORE/Cake/Core/App.php, line 899
[main] - [internal], line ??

Warning (512): _cake_core_ cache was unable to write 'method_cache' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'method_cache'
$value = array(
	(int) 0 => false,
	'name' => array(
		'45b989c52610ac6d773f6b83d6108190' => '`citloci`',
		'4d0d73f550e4b0573d9cf666d63a0244' => '`genes`',
		'003d5968b53baeeb0cb27d56c4d447af' => '`Gene`.`id`',
		'f32f1dc049466870a2299961f0604112' => '`Gene`.`gene_version`',
		'433a39b330b04a021541e6fa89d80ffd' => '`Gene`.`tax_id`',
		'56705ff3488da428f13156180dbc9fbc' => '`Gene`.`assembly`',
		'b7d572bb36c8f0f2ecfe36921c14fbf3' => '`Gene`.`chromosome`',
		'edf6b12f8a40424f91fa0a40f0eab275' => '`Gene`.`strand`',
		'71d92ec0ad29837870abd0de3ae8addc' => '`Gene`.`start`',
		'62e43d606bf4cdae2d6694c62e19e7fa' => '`Gene`.`end`',
		'7043386674301bd31c5e629dfdadabd4' => '`Gene`.`gene_name`',
		'f1454297621ddcf07c418e47f67d3857' => '`Gene`.`gene_source`',
		'27d53785bfcd771f1901030b4bb87d02' => '`Gene`.`gene_biotype`',
		'b93574bf8a03f2d6f6486e920115e0d1' => '`Gene`.`annotation_version`',
		'1c4a3f5d90070e8ea1c62ca077df603e' => '`Gene`.`gene_description`',
		'8ca7a0c53312b8ae3cfa40a9d814adac' => '`Gene`'
	),
	'fields' => array(
		'0ea8c82680a14e2566476c4ab527af47' => array(
			(int) 0 => '`Gene`.`id`',
			(int) 1 => '`Gene`.`gene_version`',
			(int) 2 => '`Gene`.`tax_id`',
			(int) 3 => '`Gene`.`assembly`',
			(int) 4 => '`Gene`.`chromosome`',
			(int) 5 => '`Gene`.`strand`',
			(int) 6 => '`Gene`.`start`',
			(int) 7 => '`Gene`.`end`',
			(int) 8 => '`Gene`.`gene_name`',
			(int) 9 => '`Gene`.`gene_source`',
			(int) 10 => '`Gene`.`gene_biotype`',
			(int) 11 => '`Gene`.`annotation_version`',
			(int) 12 => '`Gene`.`gene_description`'
		)
	)
)
$config = '_cake_core_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/persistent/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
DboSource::__destruct() - CORE/Cake/Model/Datasource/DboSource.php, line 3539
[main] - [internal], line ??

Homologs
ENSEMBL Accession	Gene Name	Description	Biotype	Species
ENSDARG00000038882	smc4	structural maintenance of chromosomes 4	protein_coding	Danio_rerio
ENSMUSG00000034349	Smc4	structural maintenance of chromosomes 4	protein_coding	Mus_musculus

C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Expression Patterns

Conserved Regions

Gene Ontology

Homologs

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