C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: F-box protein 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000116663 FBXO6 9606 + 1:11664124-11674354 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000376753 FBXO6-001 11664124-11674354 protein_coding
  ENST00000449067 FBXO6-003 11668696-11674030 protein_coding
  ENST00000474239 FBXO6-002 11664486-11672064 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000376753ENST00000449067ENST00000474239
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000376753 3.134±0.00 2.996±0.00 N/A 1.145±0.69 1.953±1.78 2.392±0.00 1.342±1.07 1.255±0.49 1.840±1.71 3.276±3.05 1.919±1.28 5.273±3.17 2.687±0.72 4.148±0.54
ENST00000449067 1.046±0.00 1.351±0.00 0.565±0.00 1.412±0.69 1.518±1.40 2.470±0.00 1.115±0.94 2.385±1.30 1.005±0.91 3.654±2.51 3.755±0.00 1.201±0.90 0.829±0.00 4.397±0.00
ENST00000474239 N/A N/A N/A N/A 0.258±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00087H CIL_00087H_0001 VISTA 1:11580820-12184055
CIL_00022X CIL_00022X_0009 CGP 1:11654375-11674354

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000077 TAS DNA damage checkpoint
GO:0001948 ISS glycoprotein binding
GO:0004842 IEA ubiquitin-protein transferase activity
GO:0005515 IPI:IEA protein binding
GO:0005737 IDA cytoplasm
GO:0006281 TAS DNA repair
GO:0006508 TAS proteolysis
GO:0006516 IEA glycoprotein catabolic process
GO:0006986 IEA response to unfolded protein
GO:0016567 IEA protein ubiquitination
GO:0019005 IDA SCF ubiquitin ligase complex
GO:0030246 IEA carbohydrate binding
GO:0030433 ISS ER-associated ubiquitin-dependent protein catabolic process
GO:0031146 IDA SCF-dependent proteasomal ubiquitin-dependent protein catabolic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000012035 zgc:100832 zgc:100832 protein_coding Danio_rerio
ENSDARG00000022623 fbxo44 F-box protein 44 protein_coding Danio_rerio
ENSDARG00000037645 zgc:173570 zgc:173570 protein_coding Danio_rerio
ENSDARG00000057884 zgc:114174 zgc:114174 protein_coding Danio_rerio
ENSDARG00000057899 zgc:114081 zgc:114081 protein_coding Danio_rerio
ENSDARG00000071029 si:dkey-147f3.4 si:dkey-147f3.4 protein_coding Danio_rerio
ENSDARG00000071044 zgc:153722 zgc:153722 protein_coding Danio_rerio
ENSDARG00000071045 si:rp71-1k13.6 si:rp71-1k13.6 protein_coding Danio_rerio
ENSDARG00000092077 si:dkey-147f3.4 si:dkey-147f3.4 protein_coding Danio_rerio
ENSDARG00000092166 si:dkey-147f3.8 si:dkey-147f3.8 protein_coding Danio_rerio
ENSMUSG00000055401 Fbxo6 F-box protein 6 protein_coding Mus_musculus

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