C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: catenin (cadherin-associated protein), alpha-like 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000119326 CTNNAL1 9606 - 9:108942569-109013529 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000325551 CTNNAL1-001 108942571-109013529 protein_coding
  ENST00000374593 CTNNAL1-005 108991896-109013512 protein_coding
  ENST00000374594 CTNNAL1-003 108942579-108963555 protein_coding
  ENST00000374595 CTNNAL1-002 108942569-109013522 protein_coding
  ENST00000488130 CTNNAL1-004 108972675-108977420 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000325551ENST00000374594ENST00000374595
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000325551 9.352±0.00 8.169±0.00 4.195±0.00 4.331±0.00 8.261±3.89 6.470±2.95 9.374±5.14 12.988±6.93 4.384±0.21 24.628±11.58 8.279±5.89 25.711±17.36 19.875±12.89 21.020±0.80
ENST00000374594 N/A N/A N/A N/A 6.119±0.00 N/A N/A N/A 2.836±0.00 N/A N/A 26.003±0.00 N/A N/A
ENST00000374595 N/A N/A N/A N/A N/A 0.980±0.34 N/A N/A N/A 8.640±0.00 N/A N/A 2.023±0.07 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001GI CIL_0001GI_0001 CGP 9:108867517-108950744
CIL_000226 CIL_000226_0002 CGP 9:108934181-109013529
CIL_0001GL CIL_0001GL_0001 CGP 9:108942569-109119945

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005829 IDA cytosol
GO:0005886 IEA plasma membrane
GO:0007155 IEA cell adhesion
GO:0007266 IDA Rho protein signal transduction
GO:0015629 IEA actin cytoskeleton
GO:0045296 IEA cadherin binding
GO:0051015 IEA actin filament binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000018162 ctnnal1 catenin (cadherin-associated protein), alpha-like 1 protein_coding Danio_rerio
ENSMUSG00000038816 Ctnnal1 catenin (cadherin associated protein), alpha-like 1 protein_coding Mus_musculus

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