C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tripartite motif containing 29
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000137699 TRIM29 9606 - 11:120111275-120185529 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000341846 TRIM29-001 120111275-120138453 protein_coding
  ENST00000475051 TRIM29-004 120112410-120138114 nonsense_mediated_decay
  ENST00000524664 TRIM29-019 120112410-120118867 processed_transcript
  ENST00000524816 TRIM29-007 120111298-120123271 protein_coding
  ENST00000524956 TRIM29-017 120115340-120121980 protein_coding
  ENST00000525327 TRIM29-016 120112410-120123442 protein_coding
  ENST00000525887 TRIM29-008 120112410-120121993 processed_transcript
  ENST00000526161 TRIM29-009 120112410-120117106 retained_intron
  ENST00000526881 TRIM29-018 120115364-120120900 protein_coding
  ENST00000528870 TRIM29-006 120112410-120125578 protein_coding
  ENST00000529011 TRIM29-013 120137740-120138453 protein_coding
  ENST00000529040 TRIM29-010 120137917-120185529 protein_coding
  ENST00000529044 TRIM29-005 120112410-120128913 protein_coding
  ENST00000529495 TRIM29-012 120137747-120139822 protein_coding
  ENST00000530470 TRIM29-015 120122952-120126357 retained_intron
  ENST00000530919 TRIM29-022 120112410-120118041 retained_intron
  ENST00000531555 TRIM29-021 120112410-120123033 nonsense_mediated_decay
  ENST00000532195 TRIM29-014 120127408-120128910 retained_intron
  ENST00000532833 TRIM29-011 120137765-120185423 protein_coding
  ENST00000533302 TRIM29-020 120112410-120123032 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000341846ENST00000475051ENST00000524816ENST00000524956ENST00000529044ENST00000530470ENST00000532195ENST00000532833ENST00000533302
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000341846 N/A 0.084±0.00 N/A N/A N/A N/A N/A 0.331±0.00 0.925±0.00 N/A N/A 0.484±0.00 N/A 0.540±0.00
ENST00000475051 1.372±0.00 N/A 0.030±0.00 0.093±0.07 7.252±0.00 0.241±0.00 N/A 0.348±0.00 0.021±0.00 4.208±4.02 N/A 2.893±0.00 N/A 2.261±0.99
ENST00000524816 1.210±0.00 N/A N/A N/A 4.900±4.17 0.314±0.00 0.012±0.00 0.341±0.00 0.034±0.00 3.586±0.00 0.706±0.00 5.058±4.07 22.398±6.84 3.968±1.33
ENST00000524956 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 222.417±0.00 105.995±0.00 17.543±0.00
ENST00000529044 N/A N/A N/A N/A N/A 0.351±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000530470 N/A 0.066±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532195 N/A N/A N/A N/A 2.831±0.00 N/A 0.052±0.00 1.606±0.00 N/A N/A 0.171±0.00 N/A N/A N/A
ENST00000532833 N/A N/A N/A N/A N/A N/A N/A N/A 0.050±0.00 N/A N/A N/A N/A N/A
ENST00000533302 N/A N/A N/A N/A N/A N/A N/A N/A 0.098±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099Y CIL_00099Y_0001 VISTA 11:119589021-120192949

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0002039 IEA p53 binding
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005737 IEA cytoplasm
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0008270 IEA zinc ion binding
GO:1900181 IEA negative regulation of protein localization to nucleus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000032013 Trim29 tripartite motif-containing 29 protein_coding Mus_musculus

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