C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: small G protein signaling modulator 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000141258 SGSM2 9606 + 17:2337498-2381058 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000268989 SGSM2-002 2337512-2381050 protein_coding
  ENST00000426855 SGSM2-001 2337514-2381058 protein_coding
  ENST00000570431 SGSM2-010 2363562-2364998 protein_coding
  ENST00000572841 SGSM2-008 2376360-2381050 retained_intron
  ENST00000572875 SGSM2-009 2337498-2362157 nonsense_mediated_decay
  ENST00000572925 SGSM2-013 2379168-2380810 protein_coding
  ENST00000573062 SGSM2-004 2337506-2364965 nonsense_mediated_decay
  ENST00000573717 SGSM2-015 2371863-2374281 retained_intron
  ENST00000573851 SGSM2-012 2377913-2379565 protein_coding
  ENST00000574250 SGSM2-014 2372581-2373385 retained_intron
  ENST00000574563 SGSM2-003 2337622-2380675 protein_coding
  ENST00000574650 SGSM2-011 2361777-2363045 protein_coding
  ENST00000574857 SGSM2-005 2363845-2374580 retained_intron
  ENST00000575367 SGSM2-007 2366528-2371820 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainKidneyLungMuscleOvaryPlacentaTestisENST00000268989ENST00000426855ENST00000574563
Transcript ID Brain Kidney Lung Muscle Ovary Placenta Testis
ENST00000268989 8.899±0.00 N/A 4.436±2.03 4.244±0.00 N/A N/A N/A
ENST00000426855 8.120±2.93 4.967±3.34 N/A N/A 13.207±0.00 5.894±0.00 N/A
ENST00000574563 N/A N/A N/A N/A N/A N/A 29.494±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00093G CIL_00093G_0001 VISTA 17:1876478-2477942
CIL_0007RP CIL_0007RP_0001 VISTA 17:1878704-2480995

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005097 IMP:IEA Rab GTPase activator activity
GO:0017137 IPI Rab GTPase binding
GO:0032313 IEA regulation of Rab GTPase activity
GO:0032851 IMP positive regulation of Rab GTPase activity
GO:0033126 IMP positive regulation of GTP catabolic process
GO:0034499 IMP late endosome to Golgi transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000063307 SGSM2 small G protein signaling modulator 2 protein_coding Danio_rerio
ENSMUSG00000038351 Sgsm2 small G protein signaling modulator 2 protein_coding Mus_musculus

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