C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: lipocalin 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000148346 LCN2 9606 + 9:128149071-128153455 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000277480 LCN2-001 128149453-128153455 protein_coding
  ENST00000372998 LCN2-002 128149518-128153139 protein_coding
  ENST00000373017 LCN2-003 128149071-128153133 protein_coding
  ENST00000470902 LCN2-004 128149441-128153453 processed_transcript
  ENST00000487719 LCN2-007 128149472-128150609 retained_intron
  ENST00000488391 LCN2-005 128151500-128153328 retained_intron
  ENST00000494317 LCN2-006 128151669-128153453 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000277480ENST00000372998ENST00000373017ENST00000487719ENST00000488391ENST00000494317
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000277480 26.374±0.00 N/A N/A 0.158±0.00 2.392±1.19 1.782±0.18 N/A 23.466±0.00 26.553±0.00 70.568±69.53 85.846±73.82 2.683±1.00 45.927±0.00
ENST00000372998 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 61.135±0.00 0.790±0.00 0.160±0.00
ENST00000373017 N/A N/A N/A N/A N/A N/A 0.039±0.00 N/A N/A N/A N/A N/A N/A
ENST00000487719 N/A N/A N/A N/A N/A 1.561±0.00 0.011±0.00 N/A N/A N/A N/A N/A 0.786±0.00
ENST00000488391 N/A N/A 0.421±0.00 N/A N/A N/A N/A 0.266±0.00 N/A N/A N/A N/A 0.095±0.00
ENST00000494317 N/A 0.303±0.00 N/A 0.065±0.00 N/A 0.641±0.00 N/A N/A N/A N/A N/A 1.005±0.00 N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0002020 IEA protease binding
GO:0005215 IEA transporter activity
GO:0005506 ISS iron ion binding
GO:0005515 IEA protein binding
GO:0005576 ISS extracellular region
GO:0005615 IDA extracellular space
GO:0005829 IEA cytosol
GO:0006810 IEA transport
GO:0006811 IEA ion transport
GO:0006915 IEA apoptotic process
GO:0006979 IEA response to oxidative stress
GO:0009615 IEA response to virus
GO:0009617 IEA response to bacterium
GO:0009635 IEA response to herbicide
GO:0009636 IEA response to toxic substance
GO:0010628 IEA positive regulation of gene expression
GO:0015891 ISS siderophore transport
GO:0031346 IEA positive regulation of cell projection organization
GO:0031667 IEA response to nutrient levels
GO:0031669 IEA cellular response to nutrient levels
GO:0036094 IEA small molecule binding
GO:0042493 IEA response to drug
GO:0042803 IEA protein homodimerization activity
GO:0045087 ISS innate immune response
GO:0055072 IEA iron ion homeostasis
GO:0070062 IDA extracellular vesicular exosome
GO:0070207 IEA protein homotrimerization
GO:0070301 IEA cellular response to hydrogen peroxide
GO:0071222 IEA cellular response to lipopolysaccharide
GO:0071347 IEA cellular response to interleukin-1
GO:0071356 IEA cellular response to tumor necrosis factor
GO:0097192 IEA extrinsic apoptotic signaling pathway in absence of ligand

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000026822 Lcn2 lipocalin 2 protein_coding Mus_musculus

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