C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ring finger protein 111
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000157450 RNF111 9606 + 15:58865175-59097419 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000348370 RNF111-001 58987655-59097419 protein_coding
  ENST00000557998 RNF111-003 58988138-59096431 protein_coding
  ENST00000558977 RNF111-008 59080944-59084364 retained_intron
  ENST00000559077 RNF111-009 59083940-59089696 retained_intron
  ENST00000559160 RNF111-006 58987677-59031138 protein_coding
  ENST00000559209 RNF111-002 58987952-59097054 protein_coding
  ENST00000559592 RNF111-011 59031624-59058684 protein_coding
  ENST00000559757 RNF111-007 58865175-59031216 protein_coding
  ENST00000560080 RNF111-012 59093402-59095511 processed_transcript
  ENST00000560216 RNF111-010 59085506-59092614 retained_intron
  ENST00000560952 RNF111-005 59085587-59096426 retained_intron
  ENST00000561186 RNF111-004 59030823-59096424 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000348370ENST00000557998ENST00000559209ENST00000560952ENST00000561186
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000348370 N/A 1.090±0.00 N/A 2.582±0.83 N/A N/A N/A N/A N/A N/A N/A 1.470±0.00 0.631±0.00 1.607±0.00
ENST00000557998 1.182±0.00 1.211±0.00 N/A 1.974±0.00 2.881±0.00 N/A N/A 2.406±0.93 N/A 2.220±0.00 N/A 2.151±0.00 N/A N/A
ENST00000559209 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.966±0.06 1.941±0.00 3.129±0.00
ENST00000560952 N/A N/A N/A N/A N/A 5.205±0.00 N/A 2.818±0.00 1.117±0.00 N/A 0.582±0.00 4.316±0.44 N/A N/A
ENST00000561186 1.546±0.00 1.361±0.00 1.801±0.00 N/A 2.172±0.00 2.231±0.00 2.284±0.93 1.246±0.00 1.270±0.00 2.891±0.36 1.712±1.25 N/A 1.877±0.25 2.646±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00024E CIL_00024E_0001 CGP 15:58865175-59097419

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000209 IEA protein polyubiquitination
GO:0004842 IMP ubiquitin-protein transferase activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0006351 TAS transcription, DNA-templated
GO:0006367 TAS transcription initiation from RNA polymerase II promoter
GO:0007179 TAS transforming growth factor beta receptor signaling pathway
GO:0007389 IEA pattern specification process
GO:0008270 IEA zinc ion binding
GO:0010467 TAS gene expression
GO:0016874 IEA ligase activity
GO:0030511 IEA positive regulation of transforming growth factor beta receptor signaling pathway
GO:0030579 IEA ubiquitin-dependent SMAD protein catabolic process
GO:0031398 IEA positive regulation of protein ubiquitination
GO:0032184 IDA SUMO polymer binding
GO:0043234 IEA protein complex
GO:0045893 IMP positive regulation of transcription, DNA-templated
GO:0045944 TAS positive regulation of transcription from RNA polymerase II promoter
GO:0046332 IEA SMAD binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000078802 RNF111 ring finger protein 111 protein_coding Danio_rerio
ENSMUSG00000032217 Rnf111 ring finger 111 protein_coding Mus_musculus

Loading