C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RNA pseudouridylate synthase domain containing 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000165526 RPUSD4 9606 - 11:126202094-126211692 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000298317 RPUSD4-001 126202094-126211692 protein_coding
  ENST00000525812 RPUSD4-005 126209551-126211297 retained_intron
  ENST00000526942 RPUSD4-003 126202782-126211629 retained_intron
  ENST00000530036 RPUSD4-008 126205719-126209723 processed_transcript
  ENST00000530903 RPUSD4-009 126203322-126206512 retained_intron
  ENST00000532674 RPUSD4-006 126204325-126211692 protein_coding
  ENST00000532800 RPUSD4-007 126209040-126211630 retained_intron
  ENST00000533628 RPUSD4-002 126202414-126211646 protein_coding
  ENST00000534393 RPUSD4-004 126205571-126211407 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartLiverMuscleOvaryTestisENST00000298317ENST00000533628
Transcript ID Brain Breast Colon Heart Liver Muscle Ovary Testis
ENST00000298317 12.554±0.00 N/A 9.530±0.00 15.062±0.00 2.751±0.00 5.596±0.00 16.540±0.00 N/A
ENST00000533628 N/A 12.735±0.00 N/A N/A N/A 26.708±0.00 30.868±0.00 33.484±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007W7 CIL_0007W7_0001 VISTA 11:125757160-126360423

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001522 IEA pseudouridine synthesis
GO:0003723 IEA RNA binding
GO:0005515 IPI protein binding
GO:0005739 IEA mitochondrion
GO:0009451 IEA RNA modification
GO:0009982 IEA pseudouridine synthase activity
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000012674 rpusd4 RNA pseudouridylate synthase domain containing 4 protein_coding Danio_rerio
ENSMUSG00000032044 Rpusd4 RNA pseudouridylate synthase domain containing 4 protein_coding Mus_musculus

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