C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: neighbor of BRCA1 gene 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000188554 NBR1 9606 + 17:43170481-43211689 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000341165 NBR1-001 43170481-43211689 protein_coding
  ENST00000422280 NBR1-201 43170494-43211687 protein_coding
  ENST00000542611 NBR1-002 43171202-43209993 protein_coding
  ENST00000585505 NBR1-005 43189914-43196120 retained_intron
  ENST00000586650 NBR1-007 43170494-43177960 protein_coding
  ENST00000589872 NBR1-004 43171243-43209857 protein_coding
  ENST00000590996 NBR1-003 43171214-43210521 protein_coding
  ENST00000592304 NBR1-006 43171225-43176676 retained_intron
  ENST00000617399 NBR1-202 43177936-43177998 misc_RNA

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000341165ENST00000422280ENST00000589872ENST00000590996
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000341165 12.293±0.00 3.768±0.00 N/A 11.391±4.48 N/A N/A N/A 9.693±0.10 11.645±5.61 3.004±0.00 17.449±7.87 N/A N/A
ENST00000422280 N/A 3.870±0.00 1.460±0.00 N/A N/A N/A 1.827±0.00 N/A 1.352±0.00 2.046±0.00 2.835±0.00 N/A 18.204±0.00
ENST00000589872 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 42.167±0.00
ENST00000590996 N/A 4.126±0.00 N/A 5.026±0.00 4.056±0.00 2.761±0.00 N/A 5.632±0.00 4.233±0.00 3.750±0.00 12.314±0.00 4.861±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00040M CIL_00040M_0001 CGP 17:43044295-43211689
CIL_0000KX CIL_0000KX_0002 CGP 17:43170481-43220041

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000407 IEA pre-autophagosomal structure
GO:0005515 IPI:IEA protein binding
GO:0005764 IEA lysosome
GO:0005770 ISS late endosome
GO:0005776 ISS autophagic vacuole
GO:0005829 IDA cytosol
GO:0008270 IEA zinc ion binding
GO:0016020 IDA membrane
GO:0016236 IDA macroautophagy
GO:0030500 ISS regulation of bone mineralization
GO:0031410 IEA cytoplasmic vesicle
GO:0032872 ISS regulation of stress-activated MAPK cascade
GO:0043130 IDA ubiquitin binding
GO:0045668 ISS negative regulation of osteoblast differentiation
GO:0051019 ISS mitogen-activated protein kinase binding
GO:0051259 IDA protein oligomerization
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077297 nbr1 neighbor of brca1 gene 1 protein_coding Danio_rerio
ENSDARG00000078772 NBR1 (2 of 2) neighbor of BRCA1 gene 1 protein_coding Danio_rerio
ENSMUSG00000017119 Nbr1 neighbor of Brca1 gene 1 protein_coding Mus_musculus

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