C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ubiquitin specific peptidase 40
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000005501 Usp40 10090 - 1:87945119-88008551 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000040783 Usp40-003 87945121-88008551 protein_coding
  ENSMUST00000186315 Usp40-004 87985755-88008528 retained_intron
  ENSMUST00000186670 Usp40-009 87949699-87951673 retained_intron
  ENSMUST00000187758 Usp40-001 87946443-88008534 protein_coding
  ENSMUST00000187871 Usp40-006 88005895-88008229 retained_intron
  ENSMUST00000188332 Usp40-002 87946443-88008534 nonsense_mediated_decay
  ENSMUST00000189409 Usp40-007 87945119-87975898 nonsense_mediated_decay
  ENSMUST00000189586 Usp40-005 88005895-88008550 retained_intron
  ENSMUST00000190446 Usp40-008 87965017-87967195 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000040783ENSMUST00000187758ENSMUST00000189409
Transcript ID Adipose Adrenal Bladder Brain Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000040783 7.792±1.06 N/A N/A 5.615±0.70 3.944±0.48 5.065±0.71 3.115±0.76 6.248±0.09 2.948±0.00 6.212±0.47 N/A N/A
ENSMUST00000187758 N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.842±0.00 6.309±0.00 3.742±0.00
ENSMUST00000189409 5.106±0.00 5.019±0.80 4.529±1.19 5.887±0.22 N/A N/A 2.176±0.44 N/A N/A 6.762±1.53 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003RA CIL_0003RA_0002 CGP 1:87803680-87945180
CIL_0003R9 CIL_0003R9_0002 CGP 1:87853287-88008551
CIL_0007HK CIL_0007HK_0002 CGP 1:87945119-88219004

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005575 ND cellular_component
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0008234 IEA cysteine-type peptidase activity
GO:0036459 IEA ubiquitinyl hydrolase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000071197 usp40 ubiquitin specific peptidase 40 protein_coding Danio_rerio
ENSG00000085982 USP40 ubiquitin specific peptidase 40 protein_coding Homo_sapiens

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