C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: polymerase (RNA) II (DNA directed) polypeptide I
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000019738 Polr2i 10090 + 7:30231948-30233390 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000019882 Polr2i-001 30231948-30233390 protein_coding
  ENSMUST00000108192 Polr2i-004 30232332-30233386 protein_coding
  ENSMUST00000108193 Polr2i-003 30232332-30233385 protein_coding
  ENSMUST00000138118 Polr2i-006 30232350-30233325 retained_intron
  ENSMUST00000138886 Polr2i-008 30232932-30233382 retained_intron
  ENSMUST00000145559 Polr2i-005 30232342-30233383 retained_intron
  ENSMUST00000149654 Polr2i-002 30232032-30233119 protein_coding
  ENSMUST00000150841 Polr2i-007 30232603-30233387 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000019882ENSMUST00000108192ENSMUST00000138118
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000019882 46.544±5.27 12.595±1.64 48.143±8.92 61.324±36.52 30.742±10.66 27.399±6.27 23.637±2.10 57.643±6.89 31.844±12.17 33.512±5.37 8.038±1.74 53.817±18.25 41.212±2.72 109.417±9.24
ENSMUST00000108192 N/A 23.109±1.46 N/A N/A 18.660±1.10 19.914±1.71 19.082±2.36 31.424±4.02 23.730±3.11 20.109±2.41 21.072±3.20 27.095±5.37 39.000±16.16 N/A
ENSMUST00000138118 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 12.662±0.00 N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001193 IBA maintenance of transcriptional fidelity during DNA-templated transcription elongation from RNA polymerase II promoter
GO:0003677 IEA DNA binding
GO:0003899 IBA DNA-directed RNA polymerase activity
GO:0005634 ISS nucleus
GO:0005665 IBA:ISS DNA-directed RNA polymerase II, core complex
GO:0006283 IBA transcription-coupled nucleotide-excision repair
GO:0006366 ISS transcription from RNA polymerase II promoter
GO:0006367 IBA transcription initiation from RNA polymerase II promoter
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000040443 polr2i polymerase (RNA) II (DNA directed) polypeptide I protein_coding Danio_rerio
ENSG00000105258 POLR2I polymerase (RNA) II (DNA directed) polypeptide I, 14.5kDa protein_coding Homo_sapiens

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