C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: small nuclear ribonucleoprotein D3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000020180 Snrpd3 10090 + 10:75517551-75537373 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000020397 Snrpd3-001 75517551-75537373 protein_coding
  ENSMUST00000191097 Snrpd3-002 75518014-75519866 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000020397ENSMUST00000191097
Transcript ID Adipose Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000020397 5.199±1.39 9.399±0.13 14.148±6.89 6.600±1.54 7.248±0.35 7.596±0.32 16.640±7.17 4.038±0.40 14.920±0.71 6.381±2.19 9.591±6.10 6.000±2.13
ENSMUST00000191097 N/A 15.605±0.00 N/A N/A N/A N/A N/A N/A N/A 10.407±0.00 21.389±9.47 N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000387 ISS spliceosomal snRNP assembly
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005683 ISS U7 snRNP
GO:0005685 ISS U1 snRNP
GO:0005687 ISS U4 snRNP
GO:0005689 IEA U12-type spliceosomal complex
GO:0005737 IDA cytoplasm
GO:0005829 ISS cytosol
GO:0019899 IEA enzyme binding
GO:0034709 ISS methylosome
GO:0034715 ISS pICln-Sm protein complex
GO:0034719 ISS SMN-Sm protein complex
GO:0044822 IEA poly(A) RNA binding
GO:0070062 IEA extracellular vesicular exosome
GO:0071013 IEA catalytic step 2 spliceosome
GO:0071208 IDA histone pre-mRNA DCP binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000013800 snrpd3 small nuclear ribonucleoprotein D3 polypeptide protein_coding Danio_rerio
ENSDARG00000076283 snrpd3l small nuclear ribonucleoprotein D3 polypeptide, like protein_coding Danio_rerio
ENSG00000100028 SNRPD3 small nuclear ribonucleoprotein D3 polypeptide 18kDa protein_coding Homo_sapiens

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