C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: syntrophin, gamma 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000025909 Sntg1 10090 - 1:8361475-9299878 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000115484 Sntg1-006 8363183-8470520 protein_coding
  ENSMUST00000115488 Sntg1-201 8363475-8803943 protein_coding
  ENSMUST00000126083 Sntg1-008 8950572-9298236 processed_transcript
  ENSMUST00000132064 Sntg1-004 8361475-9298573 protein_coding
  ENSMUST00000134075 Sntg1-002 8781531-9299509 retained_intron
  ENSMUST00000135046 Sntg1-007 8363425-8470479 protein_coding
  ENSMUST00000140295 Sntg1-001 8361475-9299238 protein_coding
  ENSMUST00000140302 Sntg1-005 8362678-9299878 nonsense_mediated_decay
  ENSMUST00000144593 Sntg1-003 8675973-9299282 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000115484ENSMUST00000115488ENSMUST00000126083ENSMUST00000132064ENSMUST00000134075ENSMUST00000135046ENSMUST00000140295ENSMUST00000140302ENSMUST00000144593
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000115484 0.070±0.00 0.369±0.13 N/A N/A 0.062±0.03 0.158±0.08 0.056±0.00 0.032±0.00 0.241±0.17 0.120±0.00 0.159±0.07 0.095±0.04 3.174±1.77
ENSMUST00000115488 0.073±0.01 0.226±0.00 0.204±0.00 3.447±0.00 0.271±0.00 N/A 0.008±0.00 0.008±0.00 0.246±0.21 0.028±0.00 0.075±0.03 0.026±0.02 0.447±0.10
ENSMUST00000126083 0.381±0.00 N/A N/A N/A 0.122±0.00 N/A N/A N/A 0.063±0.00 0.136±0.00 N/A N/A N/A
ENSMUST00000132064 N/A 0.281±0.05 0.060±0.00 N/A 0.033±0.00 N/A 0.023±0.00 0.022±0.01 0.137±0.12 N/A 0.104±0.16 N/A N/A
ENSMUST00000134075 0.042±0.02 N/A N/A N/A 0.008±0.00 0.039±0.02 0.033±0.00 0.013±0.00 N/A 0.022±0.00 0.096±0.00 N/A N/A
ENSMUST00000135046 N/A N/A N/A N/A N/A N/A N/A 0.247±0.00 0.607±0.00 N/A N/A N/A 0.500±0.00
ENSMUST00000140295 0.058±0.00 0.153±0.00 0.022±0.00 0.536±0.01 N/A N/A N/A N/A 0.008±0.00 N/A 0.033±0.01 0.011±0.00 N/A
ENSMUST00000140302 0.036±0.01 0.120±0.00 0.080±0.00 1.336±0.64 N/A N/A 0.029±0.00 N/A 0.012±0.01 N/A 0.058±0.01 0.006±0.00 N/A
ENSMUST00000144593 N/A 0.192±0.00 N/A N/A 0.010±0.00 0.069±0.07 N/A N/A 0.025±0.01 N/A N/A 0.005±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00053R CIL_00053R_0002 CGP 1:7088920-9299878

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0008022 IEA protein C-terminus binding
GO:0032587 IEA ruffle membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000061832 SNTG1 syntrophin, gamma 1 protein_coding Danio_rerio
ENSG00000147481 SNTG1 syntrophin, gamma 1 protein_coding Homo_sapiens

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