C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: postmeiotic segregation increased 1 (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026098 Pms1 10090 - 1:53189187-53297018 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000027267 Pms1-001 53189187-53297018 protein_coding
  ENSMUST00000126412 Pms1-005 53281947-53297015 protein_coding
  ENSMUST00000126590 Pms1-004 53275143-53297015 protein_coding
  ENSMUST00000128337 Pms1-006 53267863-53296975 protein_coding
  ENSMUST00000133358 Pms1-007 53275121-53282408 protein_coding
  ENSMUST00000135246 Pms1-002 53197112-53297017 protein_coding
  ENSMUST00000142922 Pms1-003 53262895-53296967 processed_transcript
  ENSMUST00000188890 Pms1-008 53295293-53297015 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027267ENSMUST00000126412ENSMUST00000126590ENSMUST00000128337ENSMUST00000133358ENSMUST00000135246ENSMUST00000142922ENSMUST00000188890
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027267 0.336±0.18 0.336±0.02 0.868±0.01 1.011±0.27 0.387±0.13 0.371±0.10 0.279±0.08 0.385±0.10 1.107±0.88 0.398±0.16 0.417±0.13 0.648±0.37 1.469±0.73 0.301±0.05
ENSMUST00000126412 N/A 0.344±0.07 N/A N/A 0.576±0.23 0.443±0.25 0.763±0.03 0.850±0.00 N/A 0.493±0.00 N/A 0.337±0.06 N/A N/A
ENSMUST00000126590 N/A 0.236±0.00 N/A N/A N/A N/A N/A 0.589±0.00 N/A N/A N/A 0.650±0.39 N/A N/A
ENSMUST00000128337 0.219±0.00 0.307±0.13 N/A 2.521±0.00 N/A 0.177±0.05 0.245±0.00 0.397±0.00 0.837±0.24 0.286±0.04 0.499±0.00 0.684±0.71 4.727±0.00 N/A
ENSMUST00000133358 N/A 0.246±0.00 N/A N/A 0.627±0.07 N/A N/A N/A N/A N/A N/A 0.501±0.00 N/A N/A
ENSMUST00000135246 N/A 0.211±0.11 N/A 0.507±0.13 0.251±0.08 0.313±0.07 0.140±0.04 0.180±0.06 0.541±0.39 0.415±0.00 0.176±0.03 0.468±0.40 0.706±0.32 0.890±0.00
ENSMUST00000142922 N/A 0.111±0.03 N/A N/A 0.106±0.02 0.062±0.00 0.069±0.00 N/A 0.206±0.05 0.077±0.00 0.103±0.01 0.166±0.07 N/A N/A
ENSMUST00000188890 0.089±0.00 N/A N/A N/A 0.399±0.15 0.302±0.10 N/A 0.289±0.08 N/A 0.187±0.02 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001W3 CIL_0001W3_0002 CGP 1:53189187-53310309

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003697 IBA single-stranded DNA binding
GO:0005524 IEA ATP binding
GO:0006200 IBA ATP catabolic process
GO:0006298 IMP mismatch repair
GO:0016887 IBA ATPase activity
GO:0030983 IEA mismatched DNA binding
GO:0032389 IBA MutLalpha complex
GO:0042493 IEA response to drug

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000000476 pms1 PMS1 postmeiotic segregation increased 1 (S. cerevisiae) protein_coding Danio_rerio
ENSG00000064933 PMS1 PMS1 postmeiotic segregation increased 1 (S. cerevisiae) protein_coding Homo_sapiens

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