C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: collagen, type IX, alpha 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026147 Col9a1 10090 + 1:24177610-24252684 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000054588 Col9a1-001 24177610-24252684 protein_coding
  ENSMUST00000088349 Col9a1-002 24195187-24252684 protein_coding
  ENSMUST00000124600 Col9a1-004 24197017-24220785 processed_transcript
  ENSMUST00000147902 Col9a1-003 24229517-24230955 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000054588ENSMUST00000088349ENSMUST00000124600
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000054588 0.009±0.00 0.183±0.11 N/A N/A 0.082±0.00 0.014±0.00 0.056±0.00 0.044±0.01 N/A N/A 0.250±0.00 N/A
ENSMUST00000088349 0.010±0.00 0.284±0.10 0.090±0.03 0.082±0.02 0.043±0.00 N/A 0.056±0.06 0.025±0.01 0.436±0.00 0.014±0.00 1.480±1.79 0.143±0.00
ENSMUST00000124600 0.007±0.00 N/A 0.062±0.02 0.138±0.05 0.071±0.03 0.052±0.02 0.004±0.00 N/A N/A 0.183±0.00 N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001894 IMP tissue homeostasis
GO:0003417 IGI growth plate cartilage development
GO:0005594 IEA collagen type IX trimer
GO:0051216 IMP cartilage development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000031483 col9a1 collagen, type IX, alpha 1 protein_coding Danio_rerio
ENSDARG00000073699 collagen, type IX, alpha 1 protein_coding Danio_rerio
ENSG00000112280 COL9A1 collagen, type IX, alpha 1 protein_coding Homo_sapiens

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