C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: lipocalin 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026822 Lcn2 10090 - 2:32384633-32387797 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000050785 Lcn2-001 32384633-32387797 protein_coding
  ENSMUST00000136509 Lcn2-002 32386556-32387759 processed_transcript
  ENSMUST00000144569 Lcn2-005 32384639-32385999 processed_transcript
  ENSMUST00000147219 Lcn2-003 32384633-32387722 processed_transcript
  ENSMUST00000155830 Lcn2-004 32385183-32386107 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000050785ENSMUST00000136509ENSMUST00000144569
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000050785 11.555±7.15 0.667±0.39 1.317±0.15 0.204±0.05 98.340±24.80 3.871±0.63 2.992±1.51 3.886±0.32 87.275±134.40 123.557±28.30 0.432±0.18 111.420±51.47 1.956±1.58 105.582±44.55
ENSMUST00000136509 N/A 0.481±0.11 N/A 0.038±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.186±0.00 N/A
ENSMUST00000144569 N/A 0.330±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.110±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00088E CIL_00088E_0002 VISTA 2:31827730-32428586

Gene Ontology
GO IDEvidence TypeGO Description
GO:0002020 IEA protease binding
GO:0005215 IEA transporter activity
GO:0005506 IDA iron ion binding
GO:0005515 IPI protein binding
GO:0005576 IDA extracellular region
GO:0005615 IEA extracellular space
GO:0005829 IEA cytosol
GO:0006811 IEA ion transport
GO:0006979 IEA response to oxidative stress
GO:0009615 IDA response to virus
GO:0009617 IEA response to bacterium
GO:0009635 IEA response to herbicide
GO:0009636 IEA response to toxic substance
GO:0010628 IEA positive regulation of gene expression
GO:0015891 IDA siderophore transport
GO:0031346 IEA positive regulation of cell projection organization
GO:0031667 IEA response to nutrient levels
GO:0031669 IEA cellular response to nutrient levels
GO:0036094 IEA small molecule binding
GO:0042493 IEA response to drug
GO:0042803 IEA protein homodimerization activity
GO:0045087 IMP innate immune response
GO:0055072 IEA iron ion homeostasis
GO:0070062 IEA extracellular vesicular exosome
GO:0070207 IEA protein homotrimerization
GO:0070301 IEA cellular response to hydrogen peroxide
GO:0071222 IEA cellular response to lipopolysaccharide
GO:0071347 IEA cellular response to interleukin-1
GO:0071356 IEA cellular response to tumor necrosis factor
GO:0097192 IDA extrinsic apoptotic signaling pathway in absence of ligand

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000148346 LCN2 lipocalin 2 protein_coding Homo_sapiens

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