C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: syntaphilin
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027457 Snph 10090 - 2:151590549-151632593 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000028951 Snph-001 151590549-151632573 protein_coding
  ENSMUST00000094456 Snph-002 151590549-151632549 protein_coding
  ENSMUST00000109875 Snph-006 151590564-151632567 protein_coding
  ENSMUST00000109877 Snph-005 151591725-151632593 protein_coding
  ENSMUST00000133378 Snph-008 151631733-151632553 retained_intron
  ENSMUST00000137936 Snph-007 151597155-151632471 protein_coding
  ENSMUST00000141692 Snph-003 151601204-151632573 processed_transcript
  ENSMUST00000143367 Snph-009 151621258-151632567 processed_transcript
  ENSMUST00000145434 Snph-011 151600816-151632526 retained_intron
  ENSMUST00000146172 Snph-010 151600979-151632540 protein_coding
  ENSMUST00000148755 Snph-004 151600996-151632561 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028951ENSMUST00000094456ENSMUST00000109875ENSMUST00000109877ENSMUST00000137936ENSMUST00000141692ENSMUST00000143367ENSMUST00000146172
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028951 N/A N/A 0.079±0.00 0.687±0.00 N/A 0.330±0.00 N/A 0.037±0.00 N/A N/A 0.140±0.02 N/A N/A N/A
ENSMUST00000094456 0.468±0.07 0.698±0.33 0.230±0.05 3.997±4.23 0.063±0.01 0.607±0.24 0.025±0.01 0.047±0.01 0.010±0.01 0.080±0.01 0.413±0.01 0.516±0.12 0.054±0.03 0.022±0.00
ENSMUST00000109875 N/A 0.333±0.00 N/A 1.241±0.52 0.099±0.00 0.365±0.12 N/A N/A N/A N/A N/A 0.197±0.00 N/A N/A
ENSMUST00000109877 0.297±0.25 1.243±0.20 0.206±0.00 2.982±1.41 0.111±0.07 1.889±0.42 0.036±0.03 0.050±0.02 0.014±0.01 0.164±0.05 0.205±0.04 2.000±0.64 0.060±0.02 0.036±0.02
ENSMUST00000137936 N/A 1.334±0.14 N/A N/A N/A N/A N/A N/A N/A 0.148±0.00 N/A N/A N/A 0.055±0.00
ENSMUST00000141692 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.093±0.00 0.090±0.03
ENSMUST00000143367 N/A N/A N/A N/A N/A N/A N/A 0.059±0.00 N/A N/A N/A N/A N/A N/A
ENSMUST00000146172 N/A N/A N/A N/A N/A N/A N/A 0.153±0.00 N/A N/A 0.341±0.00 N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005739 IDA mitochondrion
GO:0005881 ISS cytoplasmic microtubule
GO:0005886 IEA plasma membrane
GO:0007420 IEA brain development
GO:0016021 IEA integral component of membrane
GO:0017075 IEA syntaxin-1 binding
GO:0030054 IEA cell junction
GO:0030182 IEA neuron differentiation
GO:0031966 IEA mitochondrial membrane
GO:0042734 IEA presynaptic membrane
GO:0043005 IEA neuron projection
GO:0043025 IEA neuronal cell body

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000075539 snphb syntaphilin b protein_coding Danio_rerio
ENSDARG00000078485 snpha syntaphilin a protein_coding Danio_rerio
ENSG00000101298 SNPH syntaphilin protein_coding Homo_sapiens

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