C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: prominin 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000029086 Prom1 10090 - 5:43993625-44102032 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000030973 Prom1-201 44001443-44094768 protein_coding
  ENSMUST00000074113 Prom1-202 43993625-44101736 protein_coding
  ENSMUST00000087441 Prom1-203 43993625-44101736 protein_coding
  ENSMUST00000087442 Prom1-204 44001443-44094768 protein_coding
  ENSMUST00000165909 Prom1-205 43994304-44099224 protein_coding
  ENSMUST00000171543 Prom1-206 43993625-44102032 protein_coding
  ENSMUST00000177946 Prom1-207 43993625-44094768 protein_coding
  ENSMUST00000179059 Prom1-208 43993625-44094768 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030973ENSMUST00000074113ENSMUST00000087441ENSMUST00000087442ENSMUST00000165909ENSMUST00000177946
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030973 N/A 0.056±0.02 N/A N/A N/A N/A N/A N/A 0.307±0.00 N/A N/A N/A N/A N/A
ENSMUST00000074113 N/A 0.044±0.01 N/A 4.320±2.20 N/A N/A N/A N/A N/A 0.663±0.01 N/A 1.052±0.00 3.616±0.14 N/A
ENSMUST00000087441 7.676±7.19 0.111±0.05 1.495±0.17 N/A 2.528±0.43 17.651±3.20 0.195±0.03 29.251±1.44 1.952±0.81 3.209±0.72 0.633±0.17 3.195±1.31 6.523±3.66 N/A
ENSMUST00000087442 N/A N/A N/A N/A 0.866±0.00 5.053±0.00 0.103±0.00 N/A N/A N/A N/A 3.406±1.55 6.377±0.00 8.443±1.07
ENSMUST00000165909 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.047±0.00 N/A 8.165±2.23
ENSMUST00000177946 2.990±0.00 N/A N/A 2.491±0.31 0.819±0.24 9.011±1.83 0.132±0.00 N/A 0.555±0.22 0.862±0.12 0.139±0.05 1.849±0.68 7.356±2.18 9.559±3.12

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001750 IDA photoreceptor outer segment
GO:0005515 IEA protein binding
GO:0005615 IDA extracellular space
GO:0005783 ISS endoplasmic reticulum
GO:0005793 ISS endoplasmic reticulum-Golgi intermediate compartment
GO:0005886 ISS plasma membrane
GO:0005887 IDA integral component of plasma membrane
GO:0005902 IDA microvillus
GO:0005903 IDA brush border
GO:0005929 IDA cilium
GO:0009986 IDA cell surface
GO:0010842 IMP retina layer formation
GO:0016324 IDA apical plasma membrane
GO:0031982 IEA vesicle
GO:0032420 IDA stereocilium
GO:0042622 IEA photoreceptor outer segment membrane
GO:0042805 IEA actinin binding
GO:0042995 IDA cell projection
GO:0045296 IEA cadherin binding
GO:0045494 IEA photoreceptor cell maintenance
GO:0060042 IEA retina morphogenesis in camera-type eye
GO:0060219 IMP camera-type eye photoreceptor cell differentiation
GO:0070062 IEA extracellular vesicular exosome
GO:0071914 IDA prominosome
GO:0072112 IEA glomerular visceral epithelial cell differentiation
GO:0072139 IEA glomerular parietal epithelial cell differentiation
GO:2000768 IEA positive regulation of nephron tubule epithelial cell differentiation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000034007 prom1b prominin 1 b protein_coding Danio_rerio
ENSDARG00000039966 prom1a prominin 1a protein_coding Danio_rerio
ENSG00000007062 PROM1 prominin 1 protein_coding Homo_sapiens

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