C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 13 (sodium/sulfate symporters), member 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000029700 Slc13a1 10090 - 6:24088283-24168092 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000031713 Slc13a1-001 24088283-24168092 protein_coding
  ENSMUST00000174594 Slc13a1-004 24088550-24108574 processed_transcript
  ENSMUST00000176692 Slc13a1-003 24134842-24168090 retained_intron
  ENSMUST00000177412 Slc13a1-002 24105292-24108571 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000031713ENSMUST00000174594ENSMUST00000176692
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000031713 N/A N/A N/A N/A 0.022±0.01 5.370±2.41 N/A 129.600±16.18 N/A N/A N/A 0.113±0.05 N/A N/A
ENSMUST00000174594 N/A N/A N/A N/A N/A N/A N/A N/A 0.088±0.05 0.049±0.00 N/A N/A N/A N/A
ENSMUST00000176692 0.127±0.02 0.131±0.04 0.061±0.01 0.218±0.05 0.114±0.05 N/A 0.039±0.03 N/A 0.055±0.03 0.121±0.03 0.027±0.01 0.185±0.09 0.086±0.07 0.160±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001EA CIL_0001EA_0002 CGP 6:23969161-24168092
CIL_0001E3 CIL_0001E3_0002 CGP 6:24088283-24515067

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005887 ISS integral component of plasma membrane
GO:0008271 IDA secondary active sulfate transmembrane transporter activity
GO:0008272 IDA sulfate transport
GO:0015382 IEA sodium:sulfate symporter activity
GO:0035725 IEA sodium ion transmembrane transport
GO:1902358 IDA sulfate transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000045638 slc13a1 solute carrier family 13 (sodium/sulphate symporters), member 1 protein_coding Danio_rerio
ENSG00000081800 SLC13A1 solute carrier family 13 (sodium/sulfate symporter), member 1 protein_coding Homo_sapiens

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