C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ataxin 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000046876 Atxn1 10090 - 13:45549758-45964991 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000091628 Atxn1-201 45549758-45964991 protein_coding
  ENSMUST00000167708 Atxn1-202 45549758-45964991 protein_coding
  ENSMUST00000180110 Atxn1-203 45549758-45964991 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000091628ENSMUST00000167708ENSMUST00000180110
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000091628 3.477±0.97 0.969±0.00 5.799±2.32 2.500±0.30 1.905±0.74 3.128±0.36 1.377±0.33 2.526±0.82 1.146±0.70 4.227±1.52 1.760±0.57 2.521±1.49 0.722±0.76 0.517±0.31
ENSMUST00000167708 3.263±1.78 7.118±0.92 2.431±0.00 1.308±0.26 3.924±1.82 5.315±1.52 1.097±0.26 4.680±0.67 1.252±0.82 3.767±1.96 1.609±0.82 5.315±2.19 0.535±0.21 0.426±0.25
ENSMUST00000180110 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.651±0.00 1.434±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003RQ CIL_0003RQ_0002 CGP 13:45507444-45964991

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IGI negative regulation of transcription from RNA polymerase II promoter
GO:0003677 IEA DNA binding
GO:0003682 IDA chromatin binding
GO:0003723 IDA RNA binding
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0005654 ISS nucleoplasm
GO:0005737 ISS cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0008022 ISS protein C-terminus binding
GO:0008266 ISS poly(U) RNA binding
GO:0008344 IMP adult locomotory behavior
GO:0008542 IMP visual learning
GO:0016363 ISS nuclear matrix
GO:0034046 ISS poly(G) binding
GO:0042272 ISS nuclear RNA export factor complex
GO:0042326 IMP negative regulation of phosphorylation
GO:0042405 ISS nuclear inclusion body
GO:0042802 IEA identical protein binding
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0043569 IMP negative regulation of insulin-like growth factor receptor signaling pathway
GO:0043621 ISS protein self-association
GO:0045892 ISS negative regulation of transcription, DNA-templated
GO:0045944 IMP positive regulation of transcription from RNA polymerase II promoter
GO:0048286 IGI lung alveolus development
GO:0051168 ISS nuclear export
GO:0060079 IMP regulation of excitatory postsynaptic membrane potential

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000060862 atxn1b ataxin 1b protein_coding Danio_rerio
ENSDARG00000061687 atxn1a ataxin 1a protein_coding Danio_rerio
ENSG00000124788 ATXN1 ataxin 1 protein_coding Homo_sapiens

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