C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: synaptoporin
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000056296 Synpr 10090 + 14:13284780-13615459 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000070323 Synpr-001 13284780-13615459 protein_coding
  ENSMUST00000112656 Synpr-002 13454057-13615459 protein_coding
  ENSMUST00000145700 Synpr-003 13453984-13566712 retained_intron
  ENSMUST00000147677 Synpr-004 13454071-13610502 retained_intron
  ENSMUST00000153954 Synpr-005 13453958-13563045 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000070323ENSMUST00000112656ENSMUST00000145700ENSMUST00000147677ENSMUST00000153954
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000070323 0.434±0.02 1.643±0.28 0.104±0.02 3.490±3.35 0.112±0.00 0.113±0.06 0.039±0.00 N/A 0.005±0.00 N/A 0.012±0.00 0.191±0.13 0.016±0.01 0.048±0.01
ENSMUST00000112656 0.015±0.00 N/A 0.017±0.00 8.154±2.29 0.076±0.03 0.047±0.00 N/A 0.018±0.00 0.007±0.00 0.079±0.00 0.020±0.00 0.011±0.00 0.054±0.00 0.028±0.00
ENSMUST00000145700 N/A N/A N/A N/A N/A N/A N/A N/A 0.001±0.00 N/A N/A N/A N/A N/A
ENSMUST00000147677 N/A N/A N/A N/A 0.066±0.00 N/A N/A 0.021±0.00 N/A N/A N/A N/A N/A 0.007±0.00
ENSMUST00000153954 N/A N/A N/A N/A 0.519±0.44 0.363±0.21 N/A N/A N/A N/A 0.020±0.00 1.021±0.47 N/A 0.159±0.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00078O CIL_00078O_0002 CGP 14:13284780-13683148

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005215 IEA transporter activity
GO:0006810 IEA transport
GO:0030054 IEA cell junction
GO:0030285 IBA integral component of synaptic vesicle membrane
GO:0043005 IEA neuron projection

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000037587 SYNPR (1 of 2) synaptoporin protein_coding Danio_rerio
ENSDARG00000044278 synpr synaptoporin protein_coding Danio_rerio
ENSG00000163630 SYNPR synaptoporin protein_coding Homo_sapiens

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