C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: poly(rC) binding protein 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000056851 Pcbp2 10090 + 15:102470632-102500059 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000077037 Pcbp2-201 102470632-102500059 protein_coding
  ENSMUST00000078404 Pcbp2-202 102470632-102500059 protein_coding
  ENSMUST00000108838 Pcbp2-203 102470632-102500059 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000077037ENSMUST00000078404ENSMUST00000108838
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000077037 21.519±8.11 99.575±14.77 43.293±0.00 19.326±10.79 85.370±1.95 51.376±20.00 19.501±9.35 39.115±20.32 29.056±7.73 40.039±20.86 6.753±0.70 69.268±22.84 24.101±13.00 73.014±48.03
ENSMUST00000078404 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 26.558±3.88 N/A N/A
ENSMUST00000108838 26.279±0.00 33.119±7.34 19.146±3.14 24.740±10.31 23.384±11.11 25.926±6.58 11.739±3.23 29.240±8.03 20.680±7.15 25.452±4.91 9.365±0.00 38.283±7.54 16.756±2.40 36.623±28.69

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B4 CIL_0009B4_0002 VISTA 15:102394217-102994945
CIL_00033G CIL_00033G_0003 CGP 15:102470632-102517064

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005925 IEA focal adhesion
GO:0016020 IEA membrane
GO:0019899 IEA enzyme binding
GO:0030529 IEA ribonucleoprotein complex
GO:0031625 IEA ubiquitin protein ligase binding
GO:0043161 ISS proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0044822 IEA poly(A) RNA binding
GO:0045087 IEA innate immune response
GO:0050687 ISS negative regulation of defense response to virus
GO:0051607 IEA defense response to virus
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000013184 pcbp2 poly(rC) binding protein 2 protein_coding Danio_rerio
ENSG00000197111 PCBP2 poly(rC) binding protein 2 protein_coding Homo_sapiens

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