C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RIKEN cDNA 2610002J02 gene
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000073684 2610002J02Rik 10090 + 4:155249802-155256687 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000097747 2610002J02Rik-002 155250003-155256684 protein_coding
  ENSMUST00000105627 2610002J02Rik-007 155249989-155256383 protein_coding
  ENSMUST00000122957 2610002J02Rik-005 155249877-155250810 processed_transcript
  ENSMUST00000126713 2610002J02Rik-004 155249861-155250952 processed_transcript
  ENSMUST00000126803 2610002J02Rik-003 155249802-155256419 processed_transcript
  ENSMUST00000143709 2610002J02Rik-008 155250332-155256418 protein_coding
  ENSMUST00000148406 2610002J02Rik-001 155249966-155256683 nonsense_mediated_decay
  ENSMUST00000149468 2610002J02Rik-006 155249897-155256463 processed_transcript
  ENSMUST00000156404 2610002J02Rik-009 155250696-155256448 retained_intron
  ENSMUST00000178473 2610002J02Rik-201 155249966-155256687 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000097747ENSMUST00000105627ENSMUST00000143709ENSMUST00000148406ENSMUST00000149468ENSMUST00000156404ENSMUST00000178473
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000097747 11.416±0.57 21.621±5.57 8.753±0.87 10.214±6.40 13.973±3.34 8.202±2.02 2.822±0.28 6.886±0.65 2.986±0.49 10.230±0.60 0.912±0.57 12.777±4.38 3.229±0.91 2.228±1.03
ENSMUST00000105627 N/A 27.301±2.47 N/A N/A N/A 6.196±0.00 N/A 4.679±0.00 2.733±0.51 N/A N/A 11.395±1.89 N/A 1.235±0.00
ENSMUST00000143709 N/A N/A N/A N/A 11.426±2.03 6.281±0.60 2.645±0.00 11.088±3.03 5.257±1.26 9.536±0.68 N/A 11.841±1.30 N/A 2.126±0.00
ENSMUST00000148406 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.935±0.08 2.807±0.00 N/A N/A
ENSMUST00000149468 15.725±0.00 N/A N/A N/A 8.579±0.13 N/A 3.105±0.09 N/A N/A N/A N/A N/A 2.377±0.00 N/A
ENSMUST00000156404 N/A N/A N/A N/A N/A N/A 2.841±0.22 N/A N/A N/A N/A 7.010±1.03 5.546±0.00 1.752±0.00
ENSMUST00000178473 13.655±3.55 23.389±2.72 12.005±1.19 7.231±4.55 10.060±3.22 8.928±2.15 3.059±0.28 10.056±0.87 6.152±1.29 7.385±1.00 0.702±0.34 9.141±3.27 4.131±2.07 1.498±0.68

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007QV CIL_0007QV_0002 VISTA 4:154934679-155536167

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005694 ISS chromosome
GO:0006974 ISS cellular response to DNA damage stimulus
GO:0019985 ISS translesion synthesis
GO:0031593 ISS polyubiquitin binding
GO:0036297 ISS interstrand cross-link repair
GO:0043130 ISS ubiquitin binding
GO:0043240 ISS Fanconi anaemia nuclear complex
GO:0046872 IEA metal ion binding
GO:0070530 ISS K63-linked polyubiquitin binding

Homologs

No Homologs available.

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