C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00036W_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000149600-ENSG00000088305 CGP 9606 20:32702691-32809356
GeneTranscriptPositionBiotype
ENSG00000088305 (DNMT3B)
DNA (cytosine-5-)-methyltransferase 3 beta 		ENST00000201963 (DNMT3B-004) 32779852-32809356 protein_coding
ENST00000328111 (DNMT3B-001) 32762385-32809356 protein_coding
ENST00000348286 (DNMT3B-003) 32762424-32809356 protein_coding
ENST00000353855 (DNMT3B-002) 32762424-32809356 protein_coding
ENST00000443239 (DNMT3B-006) 32762596-32808280 protein_coding
ENST00000456297 (DNMT3B-005) 32762642-32808069 protein_coding
ENSG00000149600 (COMMD7)
COMM domain containing 7 		ENST00000278980 (COMMD7-001) 32702691-32743997 protein_coding
ENST00000446419 (COMMD7-004) 32702703-32743455 protein_coding
ENST00000474815 (COMMD7-005) 32704474-32743406 protein_coding
ENST00000610160 (COMMD7-003) 32702703-32743445 nonsense_mediated_decay
CIL_00036W_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000056941-ENSMUSG00000027478 CGP 10090 2:153616933-153687730
GeneTranscriptPositionBiotype
ENSMUSG00000027478 (Dnmt3b)
DNA methyltransferase 3B 		ENSMUST00000056495 (Dnmt3b-201) 153649454-153687726 protein_coding
ENSMUST00000072997 (Dnmt3b-002) 153649450-153687730 protein_coding
ENSMUST00000081628 (Dnmt3b-004) 153649453-153687730 protein_coding
ENSMUST00000088976 (Dnmt3b-005) 153649454-153687730 protein_coding
ENSMUST00000103150 (Dnmt3b-008) 153649454-153687730 protein_coding
ENSMUST00000103151 (Dnmt3b-006) 153649453-153687730 protein_coding
ENSMUST00000109771 (Dnmt3b-009) 153649617-153687316 protein_coding
ENSMUST00000109772 (Dnmt3b-007) 153649454-153687730 protein_coding
ENSMUST00000109773 (Dnmt3b-003) 153649450-153687730 protein_coding
ENSMUST00000109774 (Dnmt3b-001) 153649453-153687730 protein_coding
ENSMUST00000132132 (Dnmt3b-010) 153665802-153667959 retained_intron
ENSMUST00000140811 (Dnmt3b-011) 153669370-153670416 retained_intron
ENSMUSG00000056941 (Commd7)
COMM domain containing 7 		ENSMUST00000071852 (Commd7-001) 153616933-153632781 protein_coding
ENSMUST00000109782 (Commd7-002) 153618834-153632740 protein_coding
ENSMUST00000147822 (Commd7-003) 153618834-153632731 retained_intron
ENSMUSG00000079000 (Dnmt3bos)
DNA methyltransferase 3B, opposite strand 		ENSMUST00000124988 (Dnmt3bos-001) 153648690-153650286 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00036W_0001ENSG00000088305ENST00000201963ENST00000328111ENST00000348286ENST00000353855ENST00000443239ENST00000456297ENSG00000149600ENST00000278980ENST00000446419ENST00000474815ENST00000610160CIL_00036W_0002ENSMUSG00000027478ENSMUST00000056495ENSMUST00000072997ENSMUST00000081628ENSMUST00000088976ENSMUST00000103150ENSMUST00000103151ENSMUST00000109771ENSMUST00000109772ENSMUST00000109773ENSMUST00000109774ENSMUST00000132132ENSMUST00000140811ENSMUSG00000056941ENSMUST00000071852ENSMUST00000109782ENSMUST00000147822ENSMUSG00000079000ENSMUST00000124988
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00036W_0001ENSG00000088305ENST00000201963ENST00000328111ENST00000348286ENST00000353855ENST00000443239ENST00000456297ENSG00000149600ENST00000278980ENST00000446419ENST00000610160CIL_00036W_0002ENSMUSG00000027478ENSMUST00000056495ENSMUST00000072997ENSMUST00000081628ENSMUST00000088976ENSMUST00000103150ENSMUST00000103151ENSMUST00000109771ENSMUST00000109772ENSMUST00000109773ENSMUSG00000056941ENSMUST00000071852ENSMUST00000109782ENSMUST00000147822ENSMUSG00000079000ENSMUST00000124988
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000088305 ENST00000201963 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.331±0.00
ENST00000328111 N/A N/A N/A N/A N/A N/A 0.047±0.00 N/A N/A N/A N/A 1.457±0.00 0.608±0.00 N/A
ENST00000348286 0.116±0.00 0.045±0.00 N/A 0.054±0.00 0.330±0.00 0.147±0.00 N/A N/A 0.151±0.04 N/A N/A 0.548±0.10 0.860±0.00 0.418±0.00
ENST00000353855 N/A 0.221±0.00 0.064±0.00 N/A 0.066±0.00 N/A N/A 0.029±0.00 N/A N/A N/A 4.181±3.87 0.607±0.27 1.771±0.75
ENST00000443239 N/A N/A N/A 0.168±0.00 N/A N/A N/A N/A N/A N/A N/A 0.279±0.00 N/A N/A
ENST00000456297 N/A N/A N/A N/A N/A N/A 0.203±0.00 0.137±0.00 N/A 0.034±0.00 N/A N/A N/A N/A
ENSG00000149600 ENST00000278980 N/A N/A N/A 2.367±0.00 1.714±0.00 0.257±0.00 0.686±0.00 1.045±0.00 N/A N/A 0.583±0.00 1.702±1.12 5.093±0.16 N/A
ENST00000446419 13.622±0.00 21.865±0.00 1.774±0.00 7.901±4.35 13.841±11.02 10.235±9.50 11.333±11.06 14.273±11.67 8.751±4.80 7.349±6.07 6.502±2.82 24.867±19.08 43.789±12.64 14.077±1.44
ENST00000474815 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000610160 N/A 2.662±0.00 0.145±0.00 1.790±0.00 N/A N/A N/A N/A N/A 3.472±0.00 N/A N/A N/A 1.355±0.15
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027478 ENSMUST00000056495 N/A N/A N/A N/A N/A N/A N/A 0.117±0.03 0.266±0.08 N/A N/A 0.446±0.10 0.595±0.16 N/A
ENSMUST00000072997 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.013±0.00 N/A N/A N/A
ENSMUST00000081628 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.395±0.00 N/A 0.440±0.00 N/A N/A
ENSMUST00000088976 N/A N/A N/A N/A N/A N/A N/A 0.163±0.03 0.457±0.00 N/A N/A N/A 1.422±0.00 N/A
ENSMUST00000103150 0.285±0.14 0.332±0.14 0.174±0.03 0.246±0.00 0.360±0.11 0.335±0.17 N/A 0.233±0.00 0.525±0.19 0.541±0.23 N/A 1.097±0.45 2.198±1.12 0.226±0.00
ENSMUST00000103151 0.447±0.22 0.149±0.05 0.315±0.05 0.643±0.10 0.713±0.00 0.467±0.18 0.082±0.00 N/A 1.416±0.52 0.283±0.09 0.123±0.10 0.802±0.43 1.223±0.24 0.428±0.09
ENSMUST00000109771 0.834±0.19 N/A 0.203±0.03 0.336±0.00 0.296±0.00 0.341±0.07 0.106±0.03 0.128±0.00 0.620±0.36 0.324±0.04 0.055±0.01 0.804±0.13 2.381±1.98 0.198±0.03
ENSMUST00000109772 N/A N/A N/A N/A N/A N/A N/A 0.252±0.00 0.230±0.00 N/A 0.088±0.01 0.452±0.14 1.379±0.60 N/A
ENSMUST00000109773 0.122±0.00 N/A 0.112±0.00 N/A N/A N/A N/A 0.129±0.00 N/A 0.115±0.00 0.151±0.04 0.786±0.00 N/A 0.547±0.08
ENSMUST00000109774 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132132 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140811 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000056941 ENSMUST00000071852 3.674±0.76 13.894±4.90 3.211±0.02 3.676±0.42 4.303±2.51 3.209±0.70 1.433±0.41 2.587±0.58 2.828±1.38 3.419±0.93 0.516±0.12 6.334±3.29 2.185±0.83 1.080±0.13
ENSMUST00000109782 4.923±1.14 N/A 9.768±0.95 7.391±0.17 3.987±1.22 3.106±0.55 2.450±0.19 4.547±1.36 4.698±2.23 3.276±1.00 3.984±0.46 5.621±4.12 15.199±5.10 2.023±1.18
ENSMUST00000147822 2.700±0.75 3.924±1.07 2.999±0.30 2.065±1.07 2.425±0.84 1.551±0.20 1.071±0.38 1.230±0.27 1.057±0.26 2.560±0.77 0.401±0.08 2.764±0.82 1.251±0.27 0.705±0.13
ENSMUSG00000079000 ENSMUST00000124988 0.090±0.00 N/A 0.342±0.06 0.023±0.00 0.147±0.06 0.392±0.16 N/A 0.566±0.11 0.086±0.04 0.361±0.05 N/A 0.270±0.06 0.286±0.17 0.104±0.03

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