C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004RR_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000032708-ENSDARG00000030104 CGP 7955 9:24390119-24416476
GeneTranscriptPositionBiotype
ENSDARG00000030104 (sh3bp4)
SH3-domain binding protein 4 		ENSDART00000101685 (sh3bp4-001) 24402639-24416476 protein_coding
ENSDART00000144130 (sh3bp4-002) 24402767-24406074 retained_intron
ENSDARG00000032708 (arl4cb)
ADP-ribosylation factor-like 4Cb 		ENSDART00000046423 (arl4cb-001) 24390119-24391942 protein_coding
ENSDARG00000094734 (si:dkey-57b6.4)
si:dkey-57b6.4 		ENSDART00000135081 (si:dkey-57b6.4-003) 24397956-24400349 retained_intron
ENSDART00000135195 (si:dkey-57b6.4-005) 24397961-24400388 processed_transcript
ENSDART00000135948 (si:dkey-57b6.4-004) 24398291-24399123 retained_intron
ENSDART00000138771 (si:dkey-57b6.4-001) 24397587-24400554 processed_transcript
ENSDART00000139718 (si:dkey-57b6.4-002) 24397927-24400526 processed_transcript
CIL_0004RR_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000188042-ENSG00000130147 CGP 9606 2:234493041-235055714
GeneTranscriptPositionBiotype
ENSG00000130147 (SH3BP4)
SH3-domain binding protein 4 		ENST00000344528 (SH3BP4-003) 234978703-235055648 protein_coding
ENST00000392011 (SH3BP4-001) 234951973-235055714 protein_coding
ENST00000409212 (SH3BP4-002) 234978685-235055648 protein_coding
ENST00000416021 (SH3BP4-005) 234952076-235041135 protein_coding
ENST00000444916 (SH3BP4-007) 234978705-235040937 protein_coding
ENST00000446904 (SH3BP4-008) 234981624-235041288 protein_coding
ENST00000454947 (SH3BP4-009) 234994840-235040942 protein_coding
ENST00000462602 (SH3BP4-011) 234981634-235008594 processed_transcript
ENST00000484097 (SH3BP4-004) 234952035-234953190 processed_transcript
ENST00000489601 (SH3BP4-006) 234978700-234979898 processed_transcript
ENST00000493436 (SH3BP4-010) 234994524-234995993 processed_transcript
ENSG00000188042 (ARL4C)
ADP-ribosylation factor-like 4C 		ENST00000339728 (ARL4C-201) 234493041-234497053 protein_coding
ENST00000390645 (ARL4C-001) 234493041-234497053 protein_coding
ENSG00000235726 (AC010148.1)
 ENST00000413842 (AC010148.1-001) 234882279-234888802 lincRNA
ENST00000427619 (AC010148.1-004) 234834315-234913384 lincRNA
ENST00000434572 (AC010148.1-003) 234887369-234888526 retained_intron
ENST00000435896 (AC010148.1-002) 234834359-234888776 lincRNA
ENSG00000278593 (RP13-977E11.1)
 ENST00000611658 (RP13-977E11.1-001) 234743542-234745606 unprocessed_pseudogene
CIL_0004RR_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000049866-ENSMUSG00000036206 CGP 10090 1:88673125-89155068
GeneTranscriptPositionBiotype
ENSMUSG00000036206 (Sh3bp4)
SH3-domain binding protein 4 		ENSMUST00000066279 (Sh3bp4-001) 89070415-89155068 protein_coding
ENSMUST00000123745 (Sh3bp4-002) 89070453-89112860 processed_transcript
ENSMUSG00000097398 (2410088K16Rik)
RIKEN cDNA 2410088K16 gene 		ENSMUST00000180596 (2410088K16Rik-002) 88754954-88755709 lincRNA
ENSMUST00000181016 (2410088K16Rik-001) 88754890-88755736 lincRNA
ENSMUSG00000099378 (RP24-423I20.1)
RIKEN cDNA 1700067G17 gene 		ENSMUST00000186180 (RP24-423I20.1-001) 89016113-89022210 lincRNA
ENSMUSG00000099544 (RP24-423I20.2)
predicted gene, 18699 		ENSMUST00000190713 (RP24-423I20.2-001) 89048974-89049216 processed_pseudogene
ENSMUSG00000099848 (RP23-358L5.1)
predicted gene 29337 		ENSMUST00000185425 (RP23-358L5.1-001) 88868475-88875410 lincRNA
ENSMUSG00000101333 (RP23-358L5.2)
predicted gene 4753 		ENSMUST00000188327 (RP23-358L5.2-001) 88932319-88933573 processed_pseudogene
ENSMUSG00000101736 (RP23-299M19.2)
predicted gene 29335 		ENSMUST00000188361 (RP23-299M19.2-001) 88722366-88722824 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004RR_0001ENSDARG00000030104ENSDART00000101685ENSDART00000144130ENSDARG00000032708ENSDART00000046423ENSDARG00000094734ENSDART00000135081ENSDART00000135195ENSDART00000135948ENSDART00000138771ENSDART00000139718CIL_0004RR_0002ENSG00000130147ENST00000344528ENST00000392011ENST00000409212ENST00000416021ENST00000444916ENST00000446904ENST00000454947ENST00000462602ENST00000484097ENST00000489601ENST00000493436ENSG00000188042ENST00000339728ENST00000390645ENSG00000235726ENST00000413842ENST00000427619ENST00000434572ENST00000435896ENSG00000278593ENST00000611658CIL_0004RR_0003ENSMUSG00000036206ENSMUST00000066279ENSMUST00000123745ENSMUSG00000097398ENSMUST00000180596ENSMUST00000181016ENSMUSG00000099378ENSMUST00000186180ENSMUSG00000099544ENSMUST00000190713ENSMUSG00000099848ENSMUST00000185425ENSMUSG00000101333ENSMUST00000188327ENSMUSG00000101736ENSMUST00000188361
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004RR_0001ENSDARG00000030104ENSDART00000101685ENSDART00000144130ENSDARG00000032708ENSDART00000046423ENSDARG00000094734ENSDART00000135081ENSDART00000135948ENSDART00000139718CIL_0004RR_0002ENSG00000130147ENST00000344528ENST00000392011ENST00000409212ENSG00000188042ENST00000339728ENST00000390645ENSG00000235726ENST00000413842ENST00000427619ENST00000435896ENSG00000278593ENST00000611658CIL_0004RR_0003ENSMUSG00000036206ENSMUST00000066279ENSMUSG00000097398ENSMUST00000180596ENSMUST00000181016ENSMUSG00000099378ENSMUST00000186180ENSMUSG00000099544ENSMUST00000190713ENSMUSG00000099848ENSMUST00000185425ENSMUSG00000101333ENSMUST00000188327ENSMUSG00000101736ENSMUST00000188361
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000030104 ENSDART00000101685 N/A N/A N/A 0.854±0.18 N/A N/A 1.540±0.53 1.329±0.56 0.088±0.00 N/A 0.786±0.00 N/A N/A N/A
ENSDART00000144130 N/A N/A N/A N/A N/A N/A 0.160±0.03 0.291±0.06 0.089±0.00 N/A N/A N/A N/A N/A
ENSDARG00000032708 ENSDART00000046423 N/A N/A N/A 10.005±0.92 N/A N/A 0.697±0.31 1.847±1.74 0.088±0.00 N/A 0.871±0.00 N/A N/A N/A
ENSDARG00000094734 ENSDART00000135081 N/A N/A N/A 0.050±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000135195 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000135948 N/A N/A N/A 0.150±0.00 N/A N/A 0.160±0.00 0.575±0.10 N/A N/A N/A N/A N/A N/A
ENSDART00000138771 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000139718 N/A N/A N/A 0.680±0.40 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000130147 ENST00000344528 4.230±0.00 1.271±0.00 N/A 2.015±0.00 2.192±0.00 1.794±0.00 1.646±0.00 9.534±0.00 2.215±1.20 N/A 2.141±0.00 N/A N/A N/A
ENST00000392011 4.234±0.00 2.394±0.00 N/A 1.639±0.88 N/A 2.174±0.00 0.804±0.14 N/A 2.379±0.00 3.175±2.22 N/A 9.920±6.67 19.857±8.05 6.683±5.36
ENST00000409212 N/A N/A N/A N/A 0.997±0.25 N/A N/A N/A N/A 0.648±0.00 N/A N/A N/A N/A
ENST00000416021 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000444916 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000446904 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000454947 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000462602 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484097 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489601 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493436 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000188042 ENST00000339728 N/A N/A N/A N/A 1.102±0.00 0.870±0.37 N/A N/A N/A N/A 0.047±0.04 0.475±0.00 N/A 0.189±0.00
ENST00000390645 5.283±0.00 10.406±0.00 0.924±0.00 8.814±2.80 4.457±1.44 2.530±0.00 1.100±0.78 1.551±0.65 1.710±0.28 8.178±4.38 0.490±0.00 4.048±1.89 7.533±2.19 1.005±0.19
ENSG00000235726 ENST00000413842 N/A N/A N/A N/A N/A N/A 0.068±0.05 0.030±0.00 0.024±0.01 0.030±0.00 0.006±0.00 0.034±0.01 N/A N/A
ENST00000427619 N/A N/A N/A N/A 0.132±0.00 N/A 0.081±0.01 N/A 0.125±0.00 0.066±0.00 N/A 0.051±0.01 0.068±0.01 N/A
ENST00000434572 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000435896 N/A N/A N/A N/A 0.171±0.00 N/A N/A N/A N/A 0.058±0.00 N/A 0.064±0.03 0.217±0.00 0.115±0.00
ENSG00000278593 ENST00000611658 N/A N/A N/A N/A N/A N/A N/A 0.322±0.00 N/A 0.121±0.00 N/A 0.012±0.00 N/A 0.012±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000036206 ENSMUST00000066279 13.183±2.44 7.666±0.89 5.539±0.27 6.606±2.37 10.781±1.83 9.682±0.99 3.175±0.64 6.754±0.72 0.390±0.23 18.630±1.09 0.737±0.11 16.327±4.05 5.377±1.80 1.003±0.38
ENSMUST00000123745 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000097398 ENSMUST00000180596 N/A N/A N/A 0.116±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.254±0.00 N/A
ENSMUST00000181016 N/A N/A 0.354±0.00 0.143±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.226±0.10 N/A
ENSMUSG00000099378 ENSMUST00000186180 0.097±0.00 N/A 0.017±0.00 N/A N/A 0.139±0.00 N/A 0.160±0.02 N/A N/A N/A 0.096±0.03 N/A 11.039±5.28
ENSMUSG00000099544 ENSMUST00000190713 N/A N/A N/A N/A 1.902±0.50 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000099848 ENSMUST00000185425 0.623±0.00 N/A N/A N/A N/A N/A N/A 2.833±1.49 N/A N/A N/A N/A N/A N/A
ENSMUSG00000101333 ENSMUST00000188327 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.047±0.00
ENSMUSG00000101736 ENSMUST00000188361 N/A N/A 0.027±0.00 0.038±0.01 N/A N/A N/A N/A N/A N/A N/A N/A 0.115±0.05 0.176±0.09

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