C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005BY_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000016699-ENSDARG00000038862 CGP 7955 2:29831318-29892301
GeneTranscriptPositionBiotype
ENSDARG00000004680 (dnajb6a)
DnaJ (Hsp40) homolog, subfamily B, member 6a 		ENSDART00000019417 (dnajb6a-001) 29818117-29831299 protein_coding
ENSDART00000121655 (dnajb6a-201) 29820791-29833015 protein_coding
ENSDARG00000016699 (trpa1a)
transient receptor potential cation channel, subfamily A, member 1a 		ENSDART00000141906 (trpa1a-001) 29831318-29850278 protein_coding
ENSDARG00000038862 (kcnb2)
potassium voltage-gated channel, Shab-related subfamily, member 2 		ENSDART00000129365 (kcnb2-001) 29859811-29892301 protein_coding
ENSDART00000130344 (kcnb2-002) 29859842-29862642 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0005BY_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000104321-ENSG00000182674 CGP 9606 8:72019917-72938349
GeneTranscriptPositionBiotype
ENSG00000104321 (TRPA1)
transient receptor potential cation channel, subfamily A, member 1 		ENST00000262209 (TRPA1-001) 72021251-72075617 protein_coding
ENST00000519720 (TRPA1-006) 72034310-72041345 processed_transcript
ENST00000520596 (TRPA1-007) 72023129-72023870 processed_transcript
ENST00000520788 (TRPA1-004) 72053389-72055539 retained_intron
ENST00000522271 (TRPA1-005) 72038766-72046545 retained_intron
ENST00000523582 (TRPA1-002) 72019917-72065558 protein_coding
ENSG00000182674 (KCNB2)
potassium voltage-gated channel, Shab-related subfamily, member 2 		ENST00000523207 (KCNB2-001) 72537391-72938349 protein_coding
ENSG00000235531 (RP11-383H13.1)
 ENST00000457356 (RP11-383H13.1-003) 71844103-72056312 antisense
ENST00000512290 (RP11-383H13.1-010) 72029726-72053322 antisense
ENST00000518700 (RP11-383H13.1-005) 71961934-71966779 antisense
ENST00000518916 (RP11-383H13.1-011) 71844158-72118393 antisense
ENST00000519068 (RP11-383H13.1-007) 71962922-72062292 antisense
ENST00000519751 (RP11-383H13.1-008) 71844144-72052607 antisense
ENST00000521467 (RP11-383H13.1-006) 71828167-72002405 antisense
ENST00000522519 (RP11-383H13.1-001) 71843123-72053047 antisense
ENST00000523133 (RP11-383H13.1-009) 71970666-72002394 antisense
ENST00000524152 (RP11-383H13.1-004) 71843561-72052713 antisense
ENSG00000250979 (RP11-656G20.1)
 ENST00000503430 (RP11-656G20.1-001) 72202751-72251565 unprocessed_pseudogene
ENSG00000253226 (HAUS1P3)
HAUS augmin-like complex, subunit 1 pseudogene 3 		ENST00000523909 (HAUS1P3-001) 72618722-72619383 processed_pseudogene
ENSG00000253317 (RP11-142A23.1)
 ENST00000523602 (RP11-142A23.1-001) 72196334-72202269 lincRNA
ENSG00000253726 (RP11-313C15.1)
 ENST00000519427 (RP11-313C15.1-001) 72732045-72751843 sense_intronic
ENSG00000253784 (RP11-1145L24.1)
 ENST00000523881 (RP11-1145L24.1-001) 72874859-72881740 lincRNA
ENSG00000254347 (RP11-351E7.1)
 ENST00000521224 (RP11-351E7.1-001) 72462311-72470972 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0005BY_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000032769-ENSMUSG00000092083 CGP 10090 1:14872648-15723750
GeneTranscriptPositionBiotype
ENSMUSG00000032769 (Trpa1)
transient receptor potential cation channel, subfamily A, member 1 		ENSMUST00000041447 (Trpa1-001) 14872648-14918862 protein_coding
ENSMUSG00000073737 (Gm10566)
predicted gene 10566 		ENSMUST00000086739 (Gm10566-001) 15268802-15269797 processed_pseudogene
ENSMUSG00000092083 (Kcnb2)
potassium voltage gated channel, Shab-related subfamily, member 2 		ENSMUST00000170146 (Kcnb2-001) 15312452-15723750 protein_coding
ENSMUST00000175681 (Kcnb2-002) 15287254-15712548 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005BY_0001ENSDARG00000004680ENSDART00000019417ENSDART00000121655ENSDARG00000016699ENSDART00000141906ENSDARG00000038862ENSDART00000129365ENSDART00000130344CIL_0005BY_0002ENSG00000104321ENST00000262209ENST00000519720ENST00000520596ENST00000520788ENST00000522271ENST00000523582ENSG00000182674ENST00000523207ENSG00000235531ENST00000457356ENST00000512290ENST00000518700ENST00000518916ENST00000519068ENST00000519751ENST00000521467ENST00000522519ENST00000523133ENST00000524152ENSG00000250979ENST00000503430ENSG00000253226ENST00000523909ENSG00000253317ENST00000523602ENSG00000253726ENST00000519427ENSG00000253784ENST00000523881ENSG00000254347ENST00000521224CIL_0005BY_0003ENSMUSG00000032769ENSMUST00000041447ENSMUSG00000073737ENSMUST00000086739ENSMUSG00000092083ENSMUST00000170146ENSMUST00000175681
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005BY_0001ENSDARG00000004680ENSDART00000019417ENSDART00000121655ENSDARG00000016699ENSDART00000141906ENSDARG00000038862ENSDART00000129365CIL_0005BY_0002ENSG00000104321ENST00000262209ENST00000520788ENST00000523582ENSG00000182674ENST00000523207ENSG00000235531ENST00000457356ENST00000512290ENST00000523133ENSG00000250979ENST00000503430ENSG00000253226ENST00000523909ENSG00000253317ENST00000523602ENSG00000253726ENST00000519427ENSG00000253784ENST00000523881ENSG00000254347ENST00000521224CIL_0005BY_0003ENSMUSG00000032769ENSMUST00000041447ENSMUSG00000073737ENSMUST00000086739ENSMUSG00000092083ENSMUST00000170146ENSMUST00000175681
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000004680 ENSDART00000019417 N/A N/A N/A 12.369±0.00 N/A N/A 15.582±2.79 18.319±6.46 0.693±0.00 N/A 5.551±0.00 N/A N/A N/A
ENSDART00000121655 N/A N/A N/A N/A N/A N/A N/A N/A 0.532±0.00 N/A N/A N/A N/A N/A
ENSDARG00000016699 ENSDART00000141906 N/A N/A N/A N/A N/A N/A N/A N/A 0.086±0.00 N/A N/A N/A N/A N/A
ENSDARG00000038862 ENSDART00000129365 N/A N/A N/A 0.636±0.12 N/A N/A 0.112±0.01 0.188±0.00 0.021±0.00 N/A 0.136±0.00 N/A N/A N/A
ENSDART00000130344 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000104321 ENST00000262209 N/A N/A 0.068±0.00 N/A 0.733±0.00 1.308±0.83 N/A N/A N/A N/A N/A 1.041±0.46 N/A N/A
ENST00000519720 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520596 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520788 N/A N/A N/A N/A N/A N/A 1.596±0.00 2.472±0.00 0.265±0.00 N/A 0.835±0.00 N/A N/A N/A
ENST00000522271 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523582 N/A N/A N/A N/A N/A N/A N/A N/A 4.269±0.00 N/A N/A N/A N/A N/A
ENSG00000182674 ENST00000523207 N/A 0.102±0.00 0.035±0.00 1.656±0.52 0.155±0.07 0.018±0.01 N/A 0.024±0.00 0.262±0.00 0.048±0.00 N/A 0.023±0.01 0.008±0.00 0.281±0.18
ENSG00000235531 ENST00000457356 N/A N/A N/A N/A 0.808±0.00 0.622±0.00 0.196±0.00 N/A N/A 0.403±0.00 0.069±0.00 N/A N/A 0.650±0.30
ENST00000512290 N/A N/A N/A 2.586±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 3.115±0.00 2.261±0.00
ENST00000518700 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518916 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519068 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519751 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521467 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522519 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523133 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.973±0.00 1.326±0.00 N/A N/A N/A
ENST00000524152 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000250979 ENST00000503430 0.014±0.00 0.014±0.00 0.067±0.00 0.037±0.00 0.035±0.00 N/A N/A N/A 0.030±0.00 N/A N/A 0.016±0.00 N/A 0.030±0.00
ENSG00000253226 ENST00000523909 N/A N/A N/A 0.285±0.00 N/A N/A N/A N/A 0.072±0.00 N/A N/A N/A N/A N/A
ENSG00000253317 ENST00000523602 N/A 0.082±0.00 N/A 0.171±0.00 N/A 0.134±0.00 0.068±0.04 0.642±0.00 0.269±0.14 0.159±0.00 N/A 0.083±0.00 N/A 0.256±0.07
ENSG00000253726 ENST00000519427 N/A N/A N/A N/A 0.342±0.00 0.301±0.00 N/A 0.034±0.00 0.367±0.00 N/A N/A 0.059±0.00 N/A 0.076±0.06
ENSG00000253784 ENST00000523881 N/A N/A N/A 0.080±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.078±0.00 N/A
ENSG00000254347 ENST00000521224 N/A N/A N/A 0.098±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.238±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000032769 ENSMUST00000041447 0.008±0.00 0.065±0.04 0.020±0.01 0.040±0.01 N/A 0.373±0.12 0.023±0.00 0.008±0.00 0.005±0.00 0.017±0.00 N/A 0.051±0.01 0.025±0.01 0.009±0.00
ENSMUSG00000073737 ENSMUST00000086739 0.140±0.10 0.047±0.00 2.339±0.23 2.952±0.68 0.159±0.08 0.105±0.04 0.143±0.09 0.095±0.06 0.942±1.63 0.045±0.01 0.203±0.10 0.162±0.09 0.095±0.02 0.287±0.14
ENSMUSG00000092083 ENSMUST00000170146 0.116±0.11 0.057±0.02 0.241±0.00 0.380±0.00 N/A 0.089±0.01 0.002±0.00 0.036±0.01 0.008±0.00 N/A 0.003±0.00 0.118±0.06 0.006±0.00 0.067±0.04
ENSMUST00000175681 N/A 0.045±0.02 N/A 1.121±0.00 N/A 0.101±0.03 0.015±0.00 0.025±0.00 0.009±0.01 0.041±0.00 0.008±0.00 0.188±0.08 0.020±0.01 0.304±0.06

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