C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: splicing factor 3b, subunit 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000008310 sf3b3-201 ENSDARG00000089880 7955 - 18:18209587-18365672 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000008310
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000008310 0.947±0.59 1.374±0.77 4.685±2.96 0.964±0.00 0.848±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000CK CIL_0000CK_0001 CGP 18:18186339-18365719

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005681 IEA spliceosomal complex
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000042012 Sf3b3-201 protein_coding Mus_musculus 0 2543
ENST00000302516 SF3B3-001 protein_coding Homo_sapiens 0 2501
ENST00000567250 SF3B3-008 retained_intron Homo_sapiens 0 501
ENST00000567635 SF3B3-007 nonsense_mediated_decay Homo_sapiens 0 261
ENST00000568291 SF3B3-009 retained_intron Homo_sapiens 0 377

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