C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small nuclear ribonucleoprotein 200 (U5)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000109885 snrnp200-001 ENSDARG00000077536 7955 - 8:31878655-31901914 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000109885
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000109885 8.615±8.68 8.804±2.94 5.713±3.47 3.640±0.00 5.247±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0004386 IEA helicase activity
GO:0005524 IEA ATP binding
GO:0008026 IEA ATP-dependent helicase activity
GO:0016787 IEA hydrolase activity
GO:0017111 IEA nucleoside-triphosphatase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000103220 Snrnp200-001 protein_coding Mus_musculus 0 4327
ENSMUST00000140868 Snrnp200-003 processed_transcript Mus_musculus 0 409
ENSMUST00000142327 Snrnp200-002 retained_intron Mus_musculus 0 1133
ENST00000323853 SNRNP200-001 protein_coding Homo_sapiens 0 4337
ENST00000429650 SNRNP200-006 nonsense_mediated_decay Homo_sapiens 0 1496
ENST00000480242 SNRNP200-004 retained_intron Homo_sapiens 0 276
ENST00000480615 SNRNP200-003 retained_intron Homo_sapiens 0 992
ENST00000497539 SNRNP200-005 retained_intron Homo_sapiens 0 1700
ENST00000583145 RP13-104F24.3-001 unprocessed_pseudogene Homo_sapiens 0 669

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