C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tubby-like protein 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000001562 Tulp3-001 ENSMUSG00000001521 10090 - 6:128321140-128355851 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000001562
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000001562 7.856±2.10 7.329±3.01 9.088±0.71 8.761±6.02 3.180±0.61 1.647±0.86 2.100±0.35 9.402±1.22 1.131±0.90 5.582±1.64 1.632±0.29 11.729±1.87 3.186±1.36 1.451±0.58

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001841 IMP neural tube formation
GO:0001843 IMP neural tube closure
GO:0005515 IEA protein binding
GO:0005576 IEA extracellular region
GO:0005634 ISS nucleus
GO:0005730 IEA nucleolus
GO:0005886 IEA plasma membrane
GO:0005929 IDA cilium
GO:0005930 IDA axoneme
GO:0007420 IMP brain development
GO:0008277 ISS regulation of G-protein coupled receptor protein signaling pathway
GO:0008589 IMP regulation of smoothened signaling pathway
GO:0009952 IMP anterior/posterior pattern specification
GO:0019899 IEA enzyme binding
GO:0021904 IMP dorsal/ventral neural tube patterning
GO:0021914 IMP negative regulation of smoothened signaling pathway involved in ventral spinal cord patterning
GO:0021915 IMP neural tube development
GO:0021953 IMP central nervous system neuron differentiation
GO:0030991 ISS intraciliary transport particle A
GO:0031076 IMP embryonic camera-type eye development
GO:0032403 IEA protein complex binding
GO:0035091 ISS phosphatidylinositol binding
GO:0042733 IMP embryonic digit morphogenesis
GO:0045879 IMP negative regulation of smoothened signaling pathway
GO:0048702 IMP embryonic neurocranium morphogenesis
GO:0060173 IGI limb development
GO:0060348 IMP bone development
GO:0060434 IMP bronchus morphogenesis
GO:0060831 IMP smoothened signaling pathway involved in dorsal/ventral neural tube patterning
GO:0061548 IMP ganglion development
GO:0072372 IDA primary cilium
GO:0097546 IEA ciliary base
GO:1901621 IMP negative regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000540941 TOMM5-003 nonsense_mediated_decay Homo_sapiens 0.00002 57

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