C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: hepatoma-derived growth factor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000005017 Hdgf-001 ENSMUSG00000004897 10090 + 3:87906321-87916132 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000005017
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000005017 52.064±3.64 35.843±3.02 55.903±12.58 52.649±25.92 37.449±11.18 46.426±2.80 32.373±1.71 56.089±2.87 80.221±54.51 38.808±5.75 72.188±23.20 43.754±9.52 47.851±29.75 76.675±29.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000850 CIL_000850_0002 VISTA 3:87682625-88286876
CIL_0008JO CIL_0008JO_0002 VISTA 3:87838105-88441065

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0000166 IEA nucleotide binding
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005615 IDA extracellular space
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0008083 ISO growth factor activity
GO:0008201 IEA heparin binding
GO:0009987 IDA cellular process
GO:0034504 IEA protein localization to nucleus
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000357325 HDGF-001 protein_coding Homo_sapiens 0 1376
ENST00000368206 HDGF-003 protein_coding Homo_sapiens 0 915
ENST00000368209 HDGF-002 protein_coding Homo_sapiens 0 915
ENST00000465180 HDGF-009 processed_transcript Homo_sapiens 0 915
ENST00000469145 HDGF-005 processed_transcript Homo_sapiens 0 658
ENST00000471377 HDGF-004 processed_transcript Homo_sapiens 0 353
ENST00000477306 HDGF-008 processed_transcript Homo_sapiens 9.80909e-45 183
ENST00000482651 HDGF-006 processed_transcript Homo_sapiens 0 915
ENST00000495212 HDGF-007 processed_transcript Homo_sapiens 0 472
ENST00000537739 HDGF-201 protein_coding Homo_sapiens 0 1280

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