C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: mutL homolog 3 (E coli)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000019378 Mlh3-201 ENSMUSG00000021245 10090 - 12:85234529-85270564 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000019378
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000019378 1.291±0.45 0.872±0.58 2.881±0.28 1.328±0.04 1.207±0.44 1.226±0.41 1.159±0.16 1.427±0.63 1.067±0.34 1.833±0.51 1.936±0.63 1.411±0.86 2.102±0.25 2.189±0.82

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00084S CIL_00084S_0002 VISTA 12:85135374-85736988
CIL_00085H CIL_00085H_0002 VISTA 12:85154385-85756659
CIL_0007PT CIL_0007PT_0002 VISTA 12:85154400-85756289
CIL_0005OJ CIL_0005OJ_0002 CGP 12:85219481-85270591
CIL_0003FY CIL_0003FY_0002 CGP 12:85234529-85288438

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000793 IDA condensed chromosome
GO:0000795 IDA synaptonemal complex
GO:0001673 IDA male germ cell nucleus
GO:0003682 IDA chromatin binding
GO:0003697 IBA single-stranded DNA binding
GO:0005524 IEA ATP binding
GO:0005654 TAS nucleoplasm
GO:0005712 IDA chiasma
GO:0006200 IBA ATP catabolic process
GO:0006298 IGI mismatch repair
GO:0006974 IGI cellular response to DNA damage stimulus
GO:0007130 IMP synaptonemal complex assembly
GO:0007131 IEA reciprocal meiotic recombination
GO:0007140 IMP male meiosis
GO:0007144 IMP female meiosis I
GO:0008104 IMP protein localization
GO:0016887 IBA ATPase activity
GO:0019237 IDA centromeric DNA binding
GO:0030983 IEA mismatched DNA binding
GO:0032300 IDA mismatch repair complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000355774 MLH3-201 protein_coding Homo_sapiens 0 2355
ENST00000380968 MLH3-001 protein_coding Homo_sapiens 0 2355
ENST00000553263 MLH3-006 protein_coding Homo_sapiens 0 540
ENST00000553713 MLH3-004 protein_coding Homo_sapiens 0 1194
ENST00000554697 MLH3-010 nonsense_mediated_decay Homo_sapiens 0 377
ENST00000555144 MLH3-005 nonsense_mediated_decay Homo_sapiens 0 446
ENST00000556257 MLH3-002 protein_coding Homo_sapiens 0 2355
ENST00000556453 MLH3-012 nonsense_mediated_decay Homo_sapiens 0 379
ENST00000556740 MLH3-003 protein_coding Homo_sapiens 0 2320
ENST00000557648 MLH3-007 protein_coding Homo_sapiens 0 396

Loading