C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TAR (HIV) RNA binding protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000023813 Tarbp2-001 ENSMUSG00000023051 10090 + 15:102518459-102523676 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000023813
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000023813 14.933±1.18 21.623±0.88 16.434±3.71 27.654±7.67 15.010±5.19 23.884±1.57 20.760±2.89 16.590±1.27 17.517±7.10 15.010±1.24 13.809±0.85 16.094±6.89 23.717±15.06 62.281±30.96

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B4 CIL_0009B4_0002 VISTA 15:102394217-102994945

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003725 IEA double-stranded RNA binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 ISS cytoplasm
GO:0006417 IEA regulation of translation
GO:0016442 IEA:ISS RISC complex
GO:0030422 IEA:ISS production of siRNA involved in RNA interference
GO:0030423 ISS targeting of mRNA for destruction involved in RNA interference
GO:0031054 IEA:ISS pre-miRNA processing
GO:0035068 IDA micro-ribonucleoprotein complex
GO:0035197 IEA:ISS siRNA binding
GO:0035198 IEA miRNA binding
GO:0035280 IEA miRNA loading onto RISC involved in gene silencing by miRNA
GO:0042803 IEA protein homodimerization activity
GO:0045070 ISS positive regulation of viral genome replication
GO:0046782 IEA:ISS regulation of viral transcription
GO:0050689 ISS negative regulation of defense response to virus by host

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000266987 TARBP2-001 protein_coding Homo_sapiens 0 1712
ENST00000394357 TARBP2-009 protein_coding Homo_sapiens 0 1506
ENST00000456234 TARBP2-006 protein_coding Homo_sapiens 0 1498
ENST00000546889 TARBP2-003 retained_intron Homo_sapiens 0 486
ENST00000547064 TARBP2-015 nonsense_mediated_decay Homo_sapiens 0 798
ENST00000547388 TARBP2-010 retained_intron Homo_sapiens 2.8026e-45 185
ENST00000548971 TARBP2-005 nonsense_mediated_decay Homo_sapiens 0 1059
ENST00000549028 TARBP2-020 processed_transcript Homo_sapiens 0 453
ENST00000549572 TARBP2-007 nonsense_mediated_decay Homo_sapiens 0 859
ENST00000549610 TARBP2-002 retained_intron Homo_sapiens 0 752
ENST00000549679 TARBP2-008 nonsense_mediated_decay Homo_sapiens 0 1031
ENST00000550147 TARBP2-004 nonsense_mediated_decay Homo_sapiens 0 1609
ENST00000550407 TARBP2-016 protein_coding Homo_sapiens 0 745
ENST00000551157 TARBP2-017 retained_intron Homo_sapiens 0 623
ENST00000551741 TARBP2-022 nonsense_mediated_decay Homo_sapiens 0 1042
ENST00000552650 TARBP2-012 retained_intron Homo_sapiens 0 612
ENST00000552817 TARBP2-011 protein_coding Homo_sapiens 0 701
ENST00000552857 TARBP2-021 protein_coding Homo_sapiens 0 444

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