C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: splicing factor 3b, subunit 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000042012 Sf3b3-201 ENSMUSG00000033732 10090 - 8:110810492-110846803 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000042012
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000042012 26.117±11.63 16.634±5.29 15.783±0.17 24.497±9.43 20.573±5.80 14.447±4.39 10.464±0.54 13.354±0.32 18.221±11.99 18.916±1.16 4.709±0.33 35.212±5.91 28.609±12.97 10.226±0.86

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000CK CIL_0000CK_0002 CGP 8:110741829-110846803

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003676 IEA nucleic acid binding
GO:0005689 IEA U12-type spliceosomal complex
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0071013 IEA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000008310 sf3b3-201 protein_coding Danio_rerio 0 2543
ENSDART00000147743 sf3b3-001 protein_coding Danio_rerio 0 2527
ENSDART00000122831 sf3b3-202 protein_coding Danio_rerio 0 2523
ENST00000302516 SF3B3-001 protein_coding Homo_sapiens 0 4966
ENST00000562722 SF3B3-011 retained_intron Homo_sapiens 0 749
ENST00000563739 SF3B3-010 retained_intron Homo_sapiens 0 1101
ENST00000567250 SF3B3-008 retained_intron Homo_sapiens 0 811
ENST00000567635 SF3B3-007 nonsense_mediated_decay Homo_sapiens 0 449
ENST00000567654 SF3B3-006 protein_coding Homo_sapiens 0 409
ENST00000568291 SF3B3-009 retained_intron Homo_sapiens 0 630
ENST00000568539 SF3B3-012 retained_intron Homo_sapiens 0 588
ENST00000569687 SF3B3-005 protein_coding Homo_sapiens 0 305
ENST00000572365 SF3B3-016 retained_intron Homo_sapiens 0 684

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