C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: signal-regulatory protein alpha
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000049262 Sirpa-009 ENSMUSG00000037902 10090 + 2:129593555-129632228 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000049262
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000049262 6.048±1.06 14.432±5.97 2.549±0.00 10.798±12.20 6.417±1.72 3.644±0.65 2.924±0.75 7.413±1.75 1.393±0.79 9.153±1.92 0.247±0.09 6.996±2.78 0.924±0.38 0.274±0.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005HA CIL_0005HA_0002 CGP 2:129592835-129699844

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002244 IMP hematopoietic progenitor cell differentiation
GO:0005515 IPI protein binding
GO:0005887 IDA integral component of plasma membrane
GO:0006910 IDA phagocytosis, recognition
GO:0006911 IDA phagocytosis, engulfment
GO:0006928 IMP cellular component movement
GO:0007010 IMP cytoskeleton organization
GO:0007015 IMP actin filament organization
GO:0007160 IMP cell-matrix adhesion
GO:0050766 IDA positive regulation of phagocytosis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000356025 SIRPA-002 protein_coding Homo_sapiens 0 723
ENST00000358771 SIRPA-001 protein_coding Homo_sapiens 0 767
ENST00000400068 SIRPA-201 protein_coding Homo_sapiens 0 726
ENST00000448467 SIRPAP1-001 processed_pseudogene Homo_sapiens 0 658
ENST00000622179 SIRPA-003 protein_coding Homo_sapiens 0 793

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