C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: valosin containing protein lysine (K) methyltransferase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000058639 Vcpkmt-201 ENSMUSG00000049882 10090 - 12:69577628-69583028 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000058639
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000058639 2.815±0.94 6.738±0.89 4.107±0.10 5.281±1.12 2.957±1.53 3.582±1.28 0.920±0.13 2.913±0.41 3.785±2.45 4.425±0.33 0.982±0.31 5.546±1.32 4.651±1.11 1.953±0.89

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00016A CIL_00016A_0002 CGP 12:69577628-69681852

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005575 ND cellular_component
GO:0005737 IEA cytoplasm
GO:0016279 ISS protein-lysine N-methyltransferase activity
GO:0018023 ISS peptidyl-lysine trimethylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000395859 VCPKMT-004 protein_coding Homo_sapiens 0 671
ENST00000395860 VCPKMT-002 protein_coding Homo_sapiens 0 870
ENST00000417484 RP11-109P14.2-001 processed_pseudogene Homo_sapiens 0 316
ENST00000484763 VCPKMT-003 retained_intron Homo_sapiens 0 490
ENST00000491402 VCPKMT-001 nonsense_mediated_decay Homo_sapiens 0 806
ENST00000569518 VCPKMT-005 retained_intron Homo_sapiens 0 355

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