C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: signal-regulatory protein alpha
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000103203 Sirpa-001 ENSMUSG00000037902 10090 + 2:129592914-129632228 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000103203
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000103203 10.884±2.48 8.062±0.00 2.755±0.84 5.473±1.07 13.524±3.80 2.165±0.25 7.272±0.02 20.722±2.21 3.386±2.72 8.959±3.02 0.957±0.57 7.900±4.32 1.437±0.66 0.276±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005HA CIL_0005HA_0002 CGP 2:129592835-129699844

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002244 IMP hematopoietic progenitor cell differentiation
GO:0005515 IPI protein binding
GO:0005887 IDA integral component of plasma membrane
GO:0006910 IDA phagocytosis, recognition
GO:0006911 IDA phagocytosis, engulfment
GO:0006928 IMP cellular component movement
GO:0007010 IMP cytoskeleton organization
GO:0007015 IMP actin filament organization
GO:0007160 IMP cell-matrix adhesion
GO:0050766 IDA positive regulation of phagocytosis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000356025 SIRPA-002 protein_coding Homo_sapiens 0 776
ENST00000358771 SIRPA-001 protein_coding Homo_sapiens 0 776
ENST00000400068 SIRPA-201 protein_coding Homo_sapiens 0 776
ENST00000448467 SIRPAP1-001 processed_pseudogene Homo_sapiens 0 701
ENST00000622179 SIRPA-003 protein_coding Homo_sapiens 0 793

Loading