C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptonemal complex central element protein 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000109314 Syce3-002 ENSMUSG00000078938 10090 - 15:89390174-89410263 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonHeartKidneyLiverMusclePlacentaTestisENSMUST00000109314
Transcript ID Colon Heart Kidney Liver Muscle Placenta Testis
ENSMUST00000109314 0.480±0.33 0.217±0.00 0.099±0.00 0.148±0.03 0.135±0.04 0.220±0.16 98.822±18.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003MI CIL_0003MI_0002 CGP 15:89386827-89410503
CIL_00028I CIL_00028I_0002 CGP 15:89390174-89425863

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000801 IDA central element
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005694 IDA chromosome
GO:0007130 IMP synaptonemal complex assembly
GO:0007131 IMP reciprocal meiotic recombination
GO:0007283 IMP spermatogenesis
GO:0043065 IDA positive regulation of apoptotic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000402753 SYCE3-001 protein_coding Homo_sapiens 0 311
ENST00000406915 SYCE3-002 protein_coding Homo_sapiens 0 327

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