C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: syntaphilin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000109875 Snph-006 ENSMUSG00000027457 10090 - 2:151590564-151632567 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonOvaryENSMUST00000109875
Transcript ID Adrenal Brain Breast Colon Ovary
ENSMUST00000109875 0.333±0.00 1.241±0.52 0.099±0.00 0.365±0.12 0.197±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005739 IDA mitochondrion
GO:0005881 ISS cytoplasmic microtubule
GO:0005886 IEA plasma membrane
GO:0007420 IEA brain development
GO:0016021 IEA integral component of membrane
GO:0017075 IEA syntaxin-1 binding
GO:0030054 IEA cell junction
GO:0030182 IEA neuron differentiation
GO:0031966 IEA mitochondrial membrane
GO:0042734 IEA presynaptic membrane
GO:0043005 IEA neuron projection
GO:0043025 IEA neuronal cell body

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000381867 SNPH-001 protein_coding Homo_sapiens 0 1687
ENST00000381873 SNPH-002 protein_coding Homo_sapiens 0 1687
ENST00000402452 RAD21L1-001 protein_coding Homo_sapiens 0 224
ENST00000614659 SNPH-201 protein_coding Homo_sapiens 0 1687

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