C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: predicted gene 13176
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000117910 Gm13176-001 ENSMUSG00000083407 10090 - 2:4834136-4834612 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderOvaryPlacentaTestisENSMUST00000117910
Transcript ID Bladder Ovary Placenta Testis
ENSMUST00000117910 0.046±0.00 0.780±0.29 0.323±0.17 0.391±0.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000966 CIL_000966_0002 VISTA 2:4256144-4857875
CIL_000965 CIL_000965_0002 VISTA 2:4287585-4888762
CIL_000968 CIL_000968_0002 VISTA 2:4582644-5183763

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000361188 PRC1-003 protein_coding Homo_sapiens 0 326
ENST00000394249 PRC1-001 protein_coding Homo_sapiens 0 326
ENST00000417173 PRC1-005 retained_intron Homo_sapiens 0 213
ENST00000442656 PRC1-002 protein_coding Homo_sapiens 5e-29 134
ENST00000553494 PRC1-011 retained_intron Homo_sapiens 0 326
ENST00000555745 PRC1-008 processed_transcript Homo_sapiens 2e-18 97
ENST00000555791 PRC1-007 retained_intron Homo_sapiens 2e-27 126
ENST00000557763 PRC1-009 retained_intron Homo_sapiens 0 326
ENST00000557905 PRC1-014 protein_coding Homo_sapiens 1e-29 134
ENST00000560605 PRC1-017 retained_intron Homo_sapiens 1e-29 134

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