C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RCC1 domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000123109 Rccd1-004 ENSMUSG00000038930 10090 - 7:80316641-80324125 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000123109
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000123109 2.478±1.46 2.150±0.39 2.723±0.48 4.606±1.38 1.707±0.31 1.993±0.60 0.819±0.16 0.497±0.13 1.410±0.54 1.637±0.38 1.143±0.20 3.093±1.29 1.461±0.63 1.133±0.27

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008AY CIL_0008AY_0002 VISTA 7:80145068-80746500

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000394258 RCCD1-001 protein_coding Homo_sapiens 0 507
ENST00000555155 RCCD1-006 protein_coding Homo_sapiens 0 490
ENST00000555737 RCCD1-003 retained_intron Homo_sapiens 0 350
ENST00000556333 RCCD1-005 nonsense_mediated_decay Homo_sapiens 0 501
ENST00000556618 RCCD1-004 protein_coding Homo_sapiens 0 507
ENST00000556774 RCCD1-009 processed_transcript Homo_sapiens 3e-19 97
ENST00000557266 RCCD1-002 retained_intron Homo_sapiens 0 507
ENST00000557750 RCCD1-008 retained_intron Homo_sapiens 5e-18 97

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