C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptosomal-associated protein 23
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000130759 Snap23-008 ENSMUSG00000027287 10090 + 2:120590514-120596787 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainOvaryPlacentaTestisENSMUST00000130759
Transcript ID Brain Ovary Placenta Testis
ENSMUST00000130759 23.305±0.00 91.215±0.00 112.771±2.64 40.175±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005PK CIL_0005PK_0002 CGP 2:120506820-120601255
CIL_0005PJ CIL_0005PJ_0002 CGP 2:120567671-120609520

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000249647 SNAP23-001 protein_coding Homo_sapiens 0 331
ENST00000349777 SNAP23-201 protein_coding Homo_sapiens 3e-37 161
ENST00000397138 SNAP23-002 protein_coding Homo_sapiens 5e-38 161
ENST00000563333 SNAP23-016 retained_intron Homo_sapiens 0 331
ENST00000563765 SNAP23-006 nonsense_mediated_decay Homo_sapiens 0 331
ENST00000563830 SNAP23-017 protein_coding Homo_sapiens 0 331
ENST00000566035 SNAP23-014 nonsense_mediated_decay Homo_sapiens 0 331
ENST00000566327 SNAP23-009 protein_coding Homo_sapiens 0 326
ENST00000568514 SNAP23-013 retained_intron Homo_sapiens 0 331
ENST00000568841 SNAP23-018 protein_coding Homo_sapiens 0 331

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