C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TAR (HIV) RNA binding protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000131184 Tarbp2-002 ENSMUSG00000023051 10090 + 15:102518192-102523674 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000131184
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000131184 6.011±1.40 6.692±0.65 10.066±2.06 11.341±7.88 5.663±1.05 8.975±2.72 6.014±0.58 5.659±0.85 6.200±2.20 7.291±1.34 4.094±0.34 9.311±2.96 6.399±2.00 27.230±1.48

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B4 CIL_0009B4_0002 VISTA 15:102394217-102994945

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003725 IEA double-stranded RNA binding
GO:0016442 IEA RISC complex
GO:0030422 IEA production of siRNA involved in RNA interference
GO:0031054 IEA pre-miRNA processing
GO:0035068 IDA micro-ribonucleoprotein complex
GO:0035197 IEA siRNA binding
GO:0035280 IEA miRNA loading onto RISC involved in gene silencing by miRNA
GO:0046782 IEA regulation of viral transcription

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000266987 TARBP2-001 protein_coding Homo_sapiens 0 695
ENST00000394357 TARBP2-009 protein_coding Homo_sapiens 0 695
ENST00000456234 TARBP2-006 protein_coding Homo_sapiens 0 695
ENST00000546889 TARBP2-003 retained_intron Homo_sapiens 0 505
ENST00000547064 TARBP2-015 nonsense_mediated_decay Homo_sapiens 0 616
ENST00000547388 TARBP2-010 retained_intron Homo_sapiens 2.8026e-45 185
ENST00000548971 TARBP2-005 nonsense_mediated_decay Homo_sapiens 0 695
ENST00000549028 TARBP2-020 processed_transcript Homo_sapiens 0 274
ENST00000549572 TARBP2-007 nonsense_mediated_decay Homo_sapiens 0 499
ENST00000549610 TARBP2-002 retained_intron Homo_sapiens 0 510
ENST00000549679 TARBP2-008 nonsense_mediated_decay Homo_sapiens 0 671
ENST00000550147 TARBP2-004 nonsense_mediated_decay Homo_sapiens 0 671
ENST00000550407 TARBP2-016 protein_coding Homo_sapiens 0 215
ENST00000551157 TARBP2-017 retained_intron Homo_sapiens 0 523
ENST00000551741 TARBP2-022 nonsense_mediated_decay Homo_sapiens 0 673
ENST00000552650 TARBP2-012 retained_intron Homo_sapiens 0 433
ENST00000552817 TARBP2-011 protein_coding Homo_sapiens 0 520
ENST00000552857 TARBP2-021 protein_coding Homo_sapiens 0 281

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