C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chromobox 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000141711 Cbx3-007 ENSMUSG00000029836 10090 + 6:51470746-51478600 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007Y0 CIL_0007Y0_0002 VISTA 6:50872427-51473473
CIL_0007VE CIL_0007VE_0002 VISTA 6:50894712-51498223
CIL_0008Q3 CIL_0008Q3_0002 VISTA 6:51033774-51634476
CIL_000874 CIL_000874_0002 VISTA 6:51061843-51662696
CIL_0009DE CIL_0009DE_0002 VISTA 6:51408576-52009543
CIL_0002CO CIL_0002CO_0002 CGP 6:51460434-51483704
CIL_0007OD CIL_0007OD_0003 UCNEbase 6:51462736-52602127
CIL_0002CN CIL_0002CN_0002 CGP 6:51470360-51590679

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000325243 CBX3P1-001 processed_pseudogene Homo_sapiens 0 448
ENST00000337620 CBX3-001 protein_coding Homo_sapiens 0 494
ENST00000396386 CBX3-002 protein_coding Homo_sapiens 0 494
ENST00000402326 CBX3P9-001 processed_pseudogene Homo_sapiens 0 433
ENST00000409747 CBX3-003 protein_coding Homo_sapiens 0 254
ENST00000430257 CBX3P6-001 processed_pseudogene Homo_sapiens 0 279
ENST00000456948 CBX3-004 protein_coding Homo_sapiens 0 285
ENST00000462165 CBX3-006 protein_coding Homo_sapiens 0 444
ENST00000481057 CBX3-005 retained_intron Homo_sapiens 0 244
ENST00000481300 CBX3-007 retained_intron Homo_sapiens 0 322
ENST00000497498 CBX3-008 processed_transcript Homo_sapiens 0 494
ENST00000508108 CBX3P3-001 processed_pseudogene Homo_sapiens 0 331
ENST00000532412 CBX3P8-001 processed_pseudogene Homo_sapiens 0 285
ENST00000538909 CBX3P4-001 transcribed_processed_pseudogene Homo_sapiens 2.99878e-43 178
ENST00000552017 CBX3P5-001 processed_pseudogene Homo_sapiens 0 394

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