C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc finger SCAN domains 29
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000146243 Zscan29-002 ENSMUSG00000050619 10090 - 2:121165141-121171125 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalKidneyENSMUST00000146243
Transcript ID Adrenal Kidney
ENSMUST00000146243 6.550±0.13 3.724±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005YG CIL_0005YG_0002 CGP 2:121140428-121171125
CIL_0005YH CIL_0005YH_0002 CGP 2:121158273-121198770

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000981 IBA sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0005634 IBA nucleus
GO:0006357 IBA regulation of transcription from RNA polymerase II promoter
GO:0006366 IBA transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000219478 ZNF500-001 protein_coding Homo_sapiens 8e-31 141
ENST00000396972 ZSCAN29-201 protein_coding Homo_sapiens 0 545
ENST00000396976 ZSCAN29-001 protein_coding Homo_sapiens 0 584
ENST00000545009 ZNF500-008 protein_coding Homo_sapiens 3e-31 141
ENST00000562072 ZSCAN29-003 protein_coding Homo_sapiens 0 584
ENST00000566849 ZSCAN29-002 nonsense_mediated_decay Homo_sapiens 0 545
ENST00000568898 ZSCAN29-005 protein_coding Homo_sapiens 0 401
ENST00000570181 ZSCAN29-004 protein_coding Homo_sapiens 0 582
ENST00000588602 ZNF500-004 protein_coding Homo_sapiens 7e-32 141
ENST00000589422 ZNF500-002 nonsense_mediated_decay Homo_sapiens 2e-31 141

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