C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vacuolar protein sorting 33B (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000150585 Vps33b-002 ENSMUSG00000030534 10090 + 7:80269679-80291573 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000150585
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000150585 0.780±0.00 3.349±1.00 1.601±0.27 1.699±0.44 1.242±0.00 1.468±0.00 0.899±0.24 0.935±0.51 1.296±0.11 0.393±0.18 1.314±0.55 1.582±0.07 0.743±0.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008AY CIL_0008AY_0002 VISTA 7:80145068-80746500

Gene Ontology

GO IDEvidence TypeGO Description
GO:0006904 IEA vesicle docking involved in exocytosis
GO:0016192 ISA vesicle-mediated transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000333371 VPS33B-001 protein_coding Homo_sapiens 0 2512
ENST00000535906 VPS33B-003 protein_coding Homo_sapiens 0 2218
ENST00000554264 VPS33B-008 retained_intron Homo_sapiens 0 442
ENST00000554660 VPS33B-005 retained_intron Homo_sapiens 0 388
ENST00000556096 VPS33B-002 retained_intron Homo_sapiens 0 599
ENST00000557358 VPS33B-006 processed_transcript Homo_sapiens 3e-40 169
ENST00000557470 VPS33B-007 retained_intron Homo_sapiens 0 230
ENST00000574755 VPS33B-004 nonsense_mediated_decay Homo_sapiens 0 2135

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