C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: signal-regulatory protein alpha
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000179001 Sirpa-202 ENSMUSG00000037902 10090 + 2:129592839-129632220 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungOvaryPlacentaTestisENSMUST00000179001
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000179001 10.867±4.50 15.084±3.69 5.544±0.32 2.116±0.00 13.595±5.46 4.225±0.87 10.046±2.23 4.823±2.68 16.141±3.88 9.901±2.76 1.515±0.99 0.398±0.26

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005HA CIL_0005HA_0002 CGP 2:129592835-129699844

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002244 IMP hematopoietic progenitor cell differentiation
GO:0005515 IPI protein binding
GO:0005887 IDA integral component of plasma membrane
GO:0006910 IDA phagocytosis, recognition
GO:0006911 IDA phagocytosis, engulfment
GO:0006928 IMP cellular component movement
GO:0007010 IMP cytoskeleton organization
GO:0007015 IMP actin filament organization
GO:0007160 IMP cell-matrix adhesion
GO:0050766 IDA positive regulation of phagocytosis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000356025 SIRPA-002 protein_coding Homo_sapiens 0 778
ENST00000358771 SIRPA-001 protein_coding Homo_sapiens 0 784
ENST00000400068 SIRPA-201 protein_coding Homo_sapiens 0 929
ENST00000448467 SIRPAP1-001 processed_pseudogene Homo_sapiens 0 723
ENST00000622179 SIRPA-003 protein_coding Homo_sapiens 0 809

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